View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1020_low_12 (Length: 251)

Name: NF1020_low_12
Description: NF1020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1020_low_12
NF1020_low_12
[»] chr8 (5 HSPs)
chr8 (1-236)||(8698348-8698585)
chr8 (4-54)||(30676256-30676306)
chr8 (1-54)||(15856458-15856511)
chr8 (1-58)||(31712614-31712671)
chr8 (4-44)||(18412624-18412664)
[»] chr4 (7 HSPs)
chr4 (1-58)||(2688161-2688218)
chr4 (1-44)||(38848082-38848125)
chr4 (4-58)||(38228505-38228559)
chr4 (1-54)||(40486506-40486559)
chr4 (3-58)||(624547-624603)
chr4 (2-58)||(5497231-5497287)
chr4 (11-58)||(43584845-43584893)
[»] chr3 (5 HSPs)
chr3 (1-57)||(9326410-9326466)
chr3 (3-54)||(26880244-26880295)
chr3 (1-54)||(54408502-54408555)
chr3 (1-54)||(27837331-27837383)
chr3 (1-54)||(49443375-49443428)
[»] chr1 (2 HSPs)
chr1 (1-57)||(27178657-27178713)
chr1 (1-53)||(47469026-47469078)
[»] chr2 (6 HSPs)
chr2 (4-58)||(16904841-16904895)
chr2 (4-58)||(27444327-27444381)
chr2 (4-58)||(27497476-27497530)
chr2 (1-58)||(4659473-4659530)
chr2 (1-58)||(4878274-4878331)
chr2 (1-54)||(20919675-20919728)
[»] scaffold0246 (1 HSPs)
scaffold0246 (1-54)||(24445-24498)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-54)||(41605-41658)
[»] chr7 (2 HSPs)
chr7 (1-54)||(23274766-23274819)
chr7 (13-58)||(36114289-36114334)
[»] chr6 (2 HSPs)
chr6 (1-58)||(978083-978139)
chr6 (1-54)||(31104947-31105000)
[»] chr5 (5 HSPs)
chr5 (1-58)||(4068047-4068104)
chr5 (1-58)||(12677110-12677167)
chr5 (3-55)||(16745148-16745201)
chr5 (1-56)||(16720555-16720611)
chr5 (2-58)||(38696756-38696812)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 8698585 - 8698348
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgacnnnnnnnc-gtattagcttaaaatagaccgtctataaaatct 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||         |||||||||||||||||||||||||||||||||    
T  8698585 cggacaccccacttcttcacatttaaatatgtgagctctaaccattaaactatttgaccaaaaaaatgtattagcttaaaatagaccgtctataaaatct 8698486  T
Q  100 acnnnnnnn-ataaaaacataaaattacgggagaagaaatcaatttatacatgagttttttctttgaatgttatgtggacaaactcttattttgtcctcg 198  Q
    ||        ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8698485 acttttttttataaaaaaataaaattacgggagaagaaatcaatttatacatgagttttttctttgaatgttatgtggacaaactcttattttgtcctcg 8698386  T
Q  199 tgtagaaatgattaagaatataaggatgattatttaat 236  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  8698385 tgtagaaatgattaagaatataaggataattatttaat 8698348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 30676306 - 30676256
Alignment:
Q  4 acaccccatttcttcacatttaaatatgtgagctctaaccattaagctact 54  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||||||||    
T  30676306 acaccccatttctccacatttaattgtgtgagctctaaccattaagctact 30676256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15856511 - 15856458
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctact 54  Q
    ||||||||||| |||| ||||||||| | ||||||||||||||| || ||||||    
T  15856511 cggacaccccacttctccacatttaattgtgtgagctctaaccactaggctact 15856458  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31712614 - 31712671
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    ||||||||||| |||| |||||||| || ||||||||||| ||| || ||||||||||    
T  31712614 cggacaccccacttctccacatttatatgtgtgagctctagccactaggctacttgac 31712671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 18412624 - 18412664
Alignment:
Q  4 acaccccatttcttcacatttaaatatgtgagctctaacca 44  Q
    |||| |||||||||||||||||| |||||||| ||||||||    
T  18412624 acactccatttcttcacatttaattatgtgagttctaacca 18412664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 2688161 - 2688218
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||| || ||||||||||    
T  2688161 cggacaccccatttctccacatttaaatgtgtgagctctagccactaggctacttgac 2688218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 38848125 - 38848082
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaacca 44  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||    
T  38848125 cggacaccccacttctccacatttaaatgtgtgagctctaacca 38848082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 38228505 - 38228559
Alignment:
Q  4 acaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    ||||||||||||| ||||||||| | ||||||||||| ||| || ||||||||||    
T  38228505 acaccccatttctacacatttaattgtgtgagctctatccactaggctacttgac 38228559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40486506 - 40486559
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctact 54  Q
    ||||||| ||| |||||||||||||||| ||||||||||| ||| || ||||||    
T  40486506 cggacactccacttcttcacatttaaatgtgtgagctctagccactaggctact 40486559  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 624547 - 624603
Alignment:
Q  3 gacaccccatttcttcacatttaaa-tatgtgagctctaaccattaagctacttgac 58  Q
    ||||||||| |||| |||||||||| | ||||||||||||||| ||| |||||||||    
T  624547 gacaccccacttctccacatttaaaatgtgtgagctctaaccactaaactacttgac 624603  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 5497287 - 5497231
Alignment:
Q  2 ggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    ||||| |||| || ||||||||||| | ||||||||||||||| |||| ||||||||    
T  5497287 ggacatcccactttttcacatttaattgtgtgagctctaaccactaagttacttgac 5497231  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 43584893 - 43584845
Alignment:
Q  11 atttcttcacatttaaa-tatgtgagctctaaccattaagctacttgac 58  Q
    |||||| |||||||||| |||||||| |||||||||||| |||||||||    
T  43584893 atttctgcacatttaaaatatgtgagttctaaccattaaactacttgac 43584845  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9326466 - 9326410
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttga 57  Q
    ||||||| |||||| ||||||||||||| |||||||||||| || ||||||||||||    
T  9326466 cggacactccattttttcacatttaaatgtgtgagctctaatcactaagctacttga 9326410  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 26880244 - 26880295
Alignment:
Q  3 gacaccccatttcttcacatttaaatatgtgagctctaaccattaagctact 54  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||| ||||||    
T  26880244 gacaccccacttctccacatttaaatgtgtgagctctaaccattaggctact 26880295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 54408555 - 54408502
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctact 54  Q
    |||||||||||||| | ||||||||| ||||||||||||||||| || ||||||    
T  54408555 cggacaccccatttttccacatttaattatgtgagctctaaccactaggctact 54408502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27837331 - 27837383
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctact 54  Q
    |||||| |||||||||| |||||||||| ||||||||||||||| || ||||||    
T  27837331 cggacatcccatttctt-acatttaaatgtgtgagctctaaccactaggctact 27837383  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 49443428 - 49443375
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctact 54  Q
    ||||||||||| |||| ||||||||||| ||||||||||| ||| || ||||||    
T  49443428 cggacaccccacttctccacatttaaatgtgtgagctctagccactaggctact 49443375  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27178713 - 27178657
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttga 57  Q
    ||||||||||| |||| |||||| |||| ||||||||||||||| || |||||||||    
T  27178713 cggacaccccacttctccacattaaaatgtgtgagctctaaccactatgctacttga 27178657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 47469078 - 47469026
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctac 53  Q
    ||||||||||| |||| ||||||||| | ||||||||||||||| || |||||    
T  47469078 cggacaccccacttctccacatttaattgtgtgagctctaaccactaggctac 47469026  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 16904841 - 16904895
Alignment:
Q  4 acaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    ||||| || |||| |||| |||| | |||||||||||||||||||||||||||||    
T  16904841 acacctcaattctccacaattaattgtgtgagctctaaccattaagctacttgac 16904895  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 27444327 - 27444381
Alignment:
Q  4 acaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    |||||||| |||||||||||||||| |||||||||||| || ||  |||||||||    
T  27444327 acaccccacttcttcacatttaaatgtgtgagctctaatcactagactacttgac 27444381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 27497530 - 27497476
Alignment:
Q  4 acaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    |||||||| |||| ||||||||| ||||||||||||||||| ||  |||||||||    
T  27497530 acaccccacttctccacatttaattatgtgagctctaaccactagcctacttgac 27497476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4659473 - 4659530
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    ||||||||||| |||| |||||||| || ||||||||||| ||||||  |||||||||    
T  4659473 cggacaccccacttctccacatttatatgtgtgagctctagccattagactacttgac 4659530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4878274 - 4878331
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    ||||||||||| |||| |||||||| || ||||||||||| ||| || ||||||||||    
T  4878274 cggacaccccacttctccacatttatatgtgtgagctctagccactaggctacttgac 4878331  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20919675 - 20919728
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctact 54  Q
    ||||||||||| |||| ||||||||| ||||||||||||| ||| || ||||||    
T  20919675 cggacaccccacttctccacatttaattatgtgagctctagccactaggctact 20919728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24445 - 24498
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctact 54  Q
    ||||||| ||| |||||||||||||||| ||||||||||| ||| || ||||||    
T  24445 cggacactccacttcttcacatttaaatgtgtgagctctagccactaggctact 24498  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41658 - 41605
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctact 54  Q
    ||||||||||| |||| ||| ||||||| ||||||||||| ||| |||||||||    
T  41658 cggacaccccacttctccacgtttaaatgtgtgagctctagccactaagctact 41605  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23274819 - 23274766
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctact 54  Q
    |||||||||||||| | |||| |||| | ||||||||||| |||||||||||||    
T  23274819 cggacaccccatttttccacaattaattgtgtgagctctagccattaagctact 23274766  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 36114334 - 36114289
Alignment:
Q  13 ttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    |||| ||||||||||| ||||||||||||||||||  |||||||||    
T  36114334 ttctccacatttaaatgtgtgagctctaaccattagactacttgac 36114289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 978139 - 978083
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    ||||||||||| |||| |||| |||||| |||||| |||||||| |||||||||||||    
T  978139 cggacaccccacttctccacaattaaat-tgtgagttctaaccactaagctacttgac 978083  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31104947 - 31105000
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctact 54  Q
    ||||||||||| |||| |||||| |||| ||||||||||| |||||| ||||||    
T  31104947 cggacaccccacttctccacattaaaatgtgtgagctctagccattatgctact 31105000  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4068047 - 4068104
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    ||||||||||| |||| ||||||||| | ||||||||| ||||| || ||||||||||    
T  4068047 cggacaccccacttctccacatttaattgtgtgagctccaaccactacgctacttgac 4068104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12677167 - 12677110
Alignment:
Q  1 cggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    ||||||| |||| ||| |||||||||||||||||| |||| ||||||| ||| |||||    
T  12677167 cggacacaccatatctccacatttaaatatgtgagttctagccattaaactatttgac 12677110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16745148 - 16745201
Alignment:
Q  3 gacaccccatttcttcacatttaaat-atgtgagctctaaccattaagctactt 55  Q
    ||||||||| |||| |||| |||||| |||||||||||| ||||||||||||||    
T  16745148 gacaccccacttctccacaattaaattatgtgagctctagccattaagctactt 16745201  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16720611 - 16720555
Alignment:
Q  1 cggacaccccatttcttcacattt-aaatatgtgagctctaaccattaagctacttg 56  Q
    ||||||||||| |||||||||||| ||||||| ||||||||| |||||  |||||||    
T  16720611 cggacaccccacttcttcacatttaaaatatgcgagctctaatcattagactacttg 16720555  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 38696756 - 38696812
Alignment:
Q  2 ggacaccccatttcttcacatttaaatatgtgagctctaaccattaagctacttgac 58  Q
    |||||| ||| |||||||||||||||| ||||||||||| ||| ||  |||||||||    
T  38696756 ggacactccacttcttcacatttaaatgtgtgagctctatccactagactacttgac 38696812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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