View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1020_low_14 (Length: 243)
Name: NF1020_low_14
Description: NF1020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1020_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 9082064 - 9082209
Alignment:
| Q |
2 |
aaagcataaaagaaacttagaattcgagccataannnnnnnctcttttgcatgtgataaatggaaaatattttgatcaatttataaagaaaaggtaatgc |
101 |
Q |
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| T |
9082064 |
aaagcataaaagaaacttaggattcgagccataatttttt-ctcttttgcatgtgataaatggaaaatattttgatcaatttataaagaaaaggtaatgc |
9082162 |
T |
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| Q |
102 |
tttgttaacttcaatgaaatagtttttaactctaggaggtgcaagaa |
148 |
Q |
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| T |
9082163 |
tttgttaacttcaatgaaatagtttttaaccctagaaggtgcaagaa |
9082209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 9100730 - 9100832
Alignment:
| Q |
45 |
cttttgcatgtgataaatggaaaatattttgatcaatttataaagaaaaggtaatgctttgttaacttcaatgaaatagtttttaa-ctctaggaggtgc |
143 |
Q |
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| T |
9100730 |
cttttgcatgtaataaatgaaaaatattttgatc--tttataaacaaaatgtaatgctttgtaaacttcaatgaaatagtttttaacccctaggaggtgc |
9100827 |
T |
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| Q |
144 |
aagaa |
148 |
Q |
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||||| |
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| T |
9100828 |
aagaa |
9100832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 9105131 - 9105217
Alignment:
| Q |
43 |
ctcttttgcatgtgataaatggaaaatattttgatcaatttataaagaaaaggtaatgctttgttaacttcaatgaaatagtttttaac |
131 |
Q |
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| T |
9105131 |
ctcttttgcatgtaataaatggaaaacattttgatcaatttatacaaaaaa--taatgttttgtgtacttcaatgaaataggttttaac |
9105217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 9120220 - 9120274
Alignment:
| Q |
46 |
ttttgcatgtgataaatggaaaatattttgatcaatttataaagaaaaggtaatg |
100 |
Q |
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| T |
9120220 |
ttttgcatgtaataaatggaaaatattttgattaatttatacaaaaaaagtaatg |
9120274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 20888398 - 20888358
Alignment:
| Q |
47 |
tttgcatgtgataaatggaaaatattttgatcaatttataa |
87 |
Q |
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| T |
20888398 |
tttgcatgtgataaattgaaaattgtttgatcaatttataa |
20888358 |
T |
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