View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1020_low_15 (Length: 242)

Name: NF1020_low_15
Description: NF1020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1020_low_15
NF1020_low_15
[»] chr7 (6 HSPs)
chr7 (5-163)||(9081926-9082083)
chr7 (10-163)||(9100550-9100702)
chr7 (10-110)||(9120093-9120192)
chr7 (1-89)||(9105021-9105109)
chr7 (64-160)||(9126452-9126550)
chr7 (102-160)||(9119300-9119358)
[»] chr2 (1 HSPs)
chr2 (6-132)||(34965250-34965376)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 9082083 - 9081926
Alignment:
Q  5 ctaagtttcttttatgctttactcatctttggttccctatttctggtcacaaccaatggaagtgagtaatatttcatatcattttcaaaatttataattt 104  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  9082083 ctaagtttcttttatgctttgctcatctttgtttccctatttctggtcacaaccaatggaagtgagtaatgtttcatatcattttc-aaatttataattt 9081985  T
Q  105 aacttatatataatattccatcacctatattaacatttattttgttcttgttaggcctc 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9081984 aacttatatataatattccatcacctatattaacatttattttgttcttgttaggcctc 9081926  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 9100702 - 9100550
Alignment:
Q  10 tttcttttatgctttactcatctttggttccctatttctggtcacaaccaatggaagtgagtaatatttcatatcattttcaaaatttataatttaactt 109  Q
    |||||||||| ||||||||||||||| |||||||||| || || ||| ||||||||||||||||| ||| | ||||||||||||||| ||||||||||||    
T  9100702 tttcttttatactttactcatctttgtttccctatttatgatcgcaatcaatggaagtgagtaatgttttaaatcattttcaaaatt-ataatttaactt 9100604  T
Q  110 atatataatattccatcacctatattaacatttattttgttcttgttaggcctc 163  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9100603 atatataatattccatcatctatattaacatttattttgttcttgttaggcctc 9100550  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 9120192 - 9120093
Alignment:
Q  10 tttcttttatgctttactcatctttggttccctatttctggtcacaaccaatggaagtgagtaatatttcatatcattttcaaaatttataatttaactt 109  Q
    |||||||| |||||| ||||||||||  ||||||||| ||||| ||||||| | ||||||||| | ||||||||||||||| |||||| |||||||||||    
T  9120192 tttcttttttgctttcctcatctttgtctccctatttatggtcgcaaccaacgaaagtgagtagtgtttcatatcattttc-aaatttctaatttaactt 9120094  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 9105109 - 9105021
Alignment:
Q  1 aattctaagtttcttttatgctttactcatctttggttccctatttctggtcacaaccaatggaagtgagtaatatttcatatcatttt 89  Q
    ||||||| |||||||||||| |||||||||||||| ||| |||||| ||||| |||||||   ||||||||||  ||||||||||||||    
T  9105109 aattctatgtttcttttatggtttactcatctttgtttctctatttatggtcgcaaccaaccaaagtgagtaacgtttcatatcatttt 9105021  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 9126550 - 9126452
Alignment:
Q  64 aagtgagtaatatttcatatcattttcaaaatttataatttaacttatatataa--tattccatcacctat-attaacatttattttgttcttgttaggc 160  Q
    ||||||||||| ||||| | |||||| |||||||||||| ||| || |||||||  |||| |||||||| | ||||||||||||||||||||||||||||    
T  9126550 aagtgagtaatttttcaaaccatttt-aaaatttataatataatttgtatataaactatttcatcaccttttattaacatttattttgttcttgttaggc 9126452  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 9119358 - 9119300
Alignment:
Q  102 tttaacttatatataatattccatcacctatattaacatttattttgttcttgttaggc 160  Q
    ||||| |||||||||||||||||||||| || ||||||||||||| |||||| ||||||    
T  9119358 tttaatttatatataatattccatcaccgattttaacatttatttggttcttattaggc 9119300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 34965376 - 34965250
Alignment:
Q  6 taagtttcttttatgctttactcatctttggttccctatttctggtcacaaccaatggaagtgagtaatatttcatatcattttcaaaatttataattta 105  Q
    ||||||| |||||||||||  ||||||||  || ||||||||| ||  ||||||||||  ||||||||  |||||   |||||| ||| ||| |||||||    
T  34965376 taagtttattttatgctttgatcatctttcttttcctatttcttgttgcaaccaatggtggtgagtaacgtttcactccatttttaaattttctaattta 34965277  T
Q  106 acttatatataatattccatcacctat 132  Q
      ||||||| |||||| ||||||||||    
T  34965276 ttttatatacaatatttcatcacctat 34965250  T

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