View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1020_low_2 (Length: 542)
Name: NF1020_low_2
Description: NF1020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1020_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 99 - 542
Target Start/End: Complemental strand, 37138360 - 37137928
Alignment:
| Q |
99 |
aaattgactacggataaaaatttaatgtcattatattatccaacccatatgagcattactaatctctaccattaaatattctaactattacatcatatgg |
198 |
Q |
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| T |
37138360 |
aaattgactacggataaaaatttaatgtcattatattatccaacccatatgagcattactaatctctaccattaaatattctaactattacatcatatgg |
37138261 |
T |
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| Q |
199 |
ttctaccatctacttcactaggaatattcgttttgtaatcattacaaaacaaaacnnnnnnnngtctttgagctcaaattaacatatgccaggcatgttg |
298 |
Q |
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| T |
37138260 |
ttctaccatctacttcactacgaatattcgttttgtaatcattacaaaacacaac-----------tttgagctcaaattaacatatgcctggcatgttg |
37138172 |
T |
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| Q |
299 |
ttccaatttgatccaagagtccaagcaaattcttgattggtgggaccgccttcatcagttggtgtttcagtttccaatgactgactttttcctctacaat |
398 |
Q |
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| T |
37138171 |
ttccaatttgatccaagagtccaagcaaattcttgattggtgggaccgctttcatcagttggaatttcagttcccaatgactgactttttcctctacaat |
37138072 |
T |
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| Q |
399 |
accattcaggcattggtatttctgagggaaaattgttgagcaagcaatccaaatcatcatcgtacattgtattcagttcttcctcttgatcctcctggac |
498 |
Q |
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| T |
37138071 |
accattcaggcattggtatttctgagggaaaattgttgagcaagcaatccaaatcatcatcatacattgtattcagttcttccgtctgatcctcctgggc |
37137972 |
T |
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| Q |
499 |
tggtttcttccctgnnnnnnnnacaagtttcatatgactttagt |
542 |
Q |
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| T |
37137971 |
tggtttctttcctgttttttttacaagtttcatatgactttagt |
37137928 |
T |
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