View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1020_low_3 (Length: 512)
Name: NF1020_low_3
Description: NF1020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1020_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 103 - 404
Target Start/End: Complemental strand, 40750079 - 40749771
Alignment:
| Q |
103 |
gtcaggtgatttgtagagtaatatatgtagagattgagattcgaagcttagacaacctatcttttcatcttaaaaaatgtgaagttttagtcactaaact |
202 |
Q |
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| T |
40750079 |
gtcaggtgatttgtagagtaatatatgtagagattgaaattcaaagcttagacaacctatcttttcattttaaaaaatgtgaagttttagtcactaaact |
40749980 |
T |
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| Q |
203 |
ac----tcgcctgnnnnnnnnngacagctttttgaatgttggtgttacttgtcactgttatg------ttacggtctcatcggcatgggtgtgcatagga |
292 |
Q |
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| T |
40749979 |
accggatcaactgaaaaaaa--gacagctttttggatgttggtgttacttgtcacggttatggttatgttacggtctcatcggcatgg-tgtgcatagga |
40749883 |
T |
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| Q |
293 |
tgctgtgtcgtagggtgttgggttttctttggcttacaaagttacattaaacacaccgtgtgcgtcaccatcatcataaatattcattcatatcatataa |
392 |
Q |
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| T |
40749882 |
tgctgtgtcgtagggtgttgggttttctttggcttacaaagttacattaaacacaccgtgtgcgtcaccatcatcataaatattcattcatatcataaca |
40749783 |
T |
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| Q |
393 |
tcaaacagtaac |
404 |
Q |
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| T |
40749782 |
tcaaacagtaac |
40749771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 449 - 512
Target Start/End: Complemental strand, 40749726 - 40749663
Alignment:
| Q |
449 |
agaaacaaacaaaaaacaatcatttgaataaaattaacacattctagctagctcataattttcc |
512 |
Q |
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| T |
40749726 |
agaaacaaacaaaaaacaatcatttgaataaaataaacacattctagctagctcataattttcc |
40749663 |
T |
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