View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1020_low_4 (Length: 435)
Name: NF1020_low_4
Description: NF1020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1020_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 45675714 - 45676064
Alignment:
| Q |
1 |
ttggtgtgtcattgtcattgttctcagagaatggttgttgtgtgtttgggtcaattcctttttgctttagcttcttcttcagacttgaattccatagatt |
100 |
Q |
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| T |
45675714 |
ttggtgtgtcattgtcattgttctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttctttttcagacttgaattccatagatt |
45675813 |
T |
|
| Q |
101 |
ttttatttcattgtatgttcttccaggtaactgagctgcaatctgcgaccacctgataattcaaaaggcaccaaagtatattagtcattgtcgcttcgat |
200 |
Q |
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| T |
45675814 |
ttttatctcattgtctgttcttccaggtaactgagctgcaatctgcgaccacctgataattcaaaaggcaccaaagtatattagtcattgtcgcttcgat |
45675913 |
T |
|
| Q |
201 |
tcgtagaaagnnnnnnnnnnnnnngcatgtaacaaaataatcttgatgacttaattaaaagccaaatctaaatgcaacacttatcagttccttaattatt |
300 |
Q |
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| T |
45675914 |
tcgtagaaagaaaa------------aaata--aaaataatcttgatgacttaattaaaagccaaatctaaatgcaacacttatcaattccttaattatt |
45675999 |
T |
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| Q |
301 |
acaattattggtacctgttgcctaggagtgcatgaagttcaattatggaattctcttcttgctct |
365 |
Q |
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| T |
45676000 |
acaattattggtacctgttgcctaggagtgcatgaagttcaattatggaattctcttcttgctct |
45676064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 37963188 - 37963053
Alignment:
| Q |
23 |
ctcagagaatggttgttgtgtgtttgggtcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtatgttctt |
122 |
Q |
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| T |
37963188 |
ctcagagagtggtttgtgtgtgtttggatcaatgccactttgtctcaacctcttcttgagacatgaattccatagatttttaatctcattgtcagttctt |
37963089 |
T |
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| Q |
123 |
ccaggtaactgagctgcaatctgcgaccacctgata |
158 |
Q |
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|| ||||| || ||||||||||| ||||| |||||| |
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| T |
37963088 |
cctggtaattgtgctgcaatctgagaccatctgata |
37963053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 16138163 - 16138201
Alignment:
| Q |
92 |
ccatagattttttatttcattgtatgttcttccaggtaa |
130 |
Q |
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| T |
16138163 |
ccatacattttttatttcattgtctgttcttccaggtaa |
16138201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 16127079 - 16127111
Alignment:
| Q |
98 |
attttttatttcattgtatgttcttccaggtaa |
130 |
Q |
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| T |
16127079 |
attttttatttcattgtctgttcttccaggtaa |
16127111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 53557754 - 53557711
Alignment:
| Q |
99 |
ttttttatttcattgtatgttcttccaggtaactgagctgcaat |
142 |
Q |
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|||||||| ||||||| ||||||||||||||||||||| ||||| |
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| T |
53557754 |
ttttttatgtcattgtctgttcttccaggtaactgagcagcaat |
53557711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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