View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1020_low_5 (Length: 312)
Name: NF1020_low_5
Description: NF1020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1020_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 4961901 - 4962105
Alignment:
| Q |
32 |
caaaagagacattgattccaatcttagacgttcattctccgttgataatatgagattgtattgcatggttaaccctagctggttttttagttcccggttt |
131 |
Q |
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| T |
4961901 |
caaaagagacattgattccaatcttagacgttcattctccgttgataatatgagattgtattgcatggttaaccctagctggttttttagttcccggttt |
4962000 |
T |
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| Q |
132 |
tccattctcaaccggttcaaatcgttcgtgaggttctctacgtgccgcttctttctccaacgtgaccgcctagctgactcccggtttgattgcattctcc |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4962001 |
tccattctcaaccggttcaaatcgttcgtgaggttctctacgtgccgcttctttctccaacgtgaccgcctagctgactcccggtttgattgcattctcc |
4962100 |
T |
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| Q |
232 |
ttatt |
236 |
Q |
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||||| |
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| T |
4962101 |
ttatt |
4962105 |
T |
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