View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1020_low_6 (Length: 295)
Name: NF1020_low_6
Description: NF1020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1020_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 28 - 295
Target Start/End: Complemental strand, 31202168 - 31201898
Alignment:
| Q |
28 |
caattttgtcaacaaaaccaaagcctcattaggagtgatttggaacacctttgaagacttggaatcattaccactatca---ctaagccaacaattttca |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31202168 |
caattttgtcaacaaaaccaaagcctcattaggagtgatttggaacacctttgaagacttggaatcattaccactatcaacactaagccaacaattttca |
31202069 |
T |
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| Q |
125 |
attccaatgttcccaataggaccttttcacaagtatttccctactaacaatacatcttcttctagcagcttaataccacaagaccaaaattgcatttcat |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202068 |
attccaatgttcccaataggaccttttcacaagtatttccctactaacaatacatcttcttctagcagcttaataccacaagaccaaaattgcatttcat |
31201969 |
T |
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| Q |
225 |
ggttaaacaaacacaaaccaaaatctgtggtttatgtgagttttggaagtgtagcttcaataaccgaggcg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201968 |
ggttaaacaaacacaaaccaaaatctgtggtttatgtgagttttggaagtgtagcttcaataaccgaggcg |
31201898 |
T |
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