View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10210_high_3 (Length: 510)

Name: NF10210_high_3
Description: NF10210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10210_high_3
NF10210_high_3
[»] chr3 (23 HSPs)
chr3 (14-356)||(47935293-47935635)
chr3 (14-211)||(47928004-47928201)
chr3 (14-211)||(47946580-47946777)
chr3 (143-211)||(47918242-47918310)
chr3 (358-430)||(54308454-54308526)
chr3 (357-430)||(18745345-18745418)
chr3 (362-430)||(18744625-18744693)
chr3 (357-404)||(20807937-20807984)
chr3 (354-404)||(20808608-20808658)
chr3 (357-404)||(4706957-4707004)
chr3 (357-406)||(15287567-15287616)
chr3 (359-404)||(47677523-47677568)
chr3 (355-404)||(49350271-49350320)
chr3 (357-409)||(55323-55375)
chr3 (348-428)||(36540008-36540088)
chr3 (355-399)||(49349674-49349718)
chr3 (357-404)||(54751796-54751843)
chr3 (357-407)||(3584005-3584055)
chr3 (358-404)||(9830573-9830619)
chr3 (357-399)||(47571196-47571238)
chr3 (357-399)||(53344017-53344059)
chr3 (356-405)||(43454161-43454210)
chr3 (355-399)||(47571945-47571989)
[»] chr8 (19 HSPs)
chr8 (357-492)||(33322116-33322251)
chr8 (358-451)||(33321498-33321591)
chr8 (355-404)||(16911047-16911096)
chr8 (357-408)||(4402284-4402335)
chr8 (357-399)||(202577-202619)
chr8 (357-399)||(317414-317456)
chr8 (357-406)||(26847720-26847769)
chr8 (357-409)||(19220913-19220965)
chr8 (357-405)||(26847097-26847145)
chr8 (357-404)||(22632969-22633016)
chr8 (357-404)||(32339948-32339995)
chr8 (357-408)||(35347665-35347716)
chr8 (358-404)||(22632323-22632369)
chr8 (357-399)||(40599887-40599929)
chr8 (357-399)||(42094009-42094051)
chr8 (362-426)||(203460-203524)
chr8 (362-426)||(318297-318361)
chr8 (357-405)||(5434032-5434080)
chr8 (357-405)||(36403025-36403073)
[»] chr5 (17 HSPs)
chr5 (357-487)||(29594906-29595036)
chr5 (357-451)||(29595548-29595642)
chr5 (414-473)||(7807052-7807111)
chr5 (357-427)||(27345897-27345967)
chr5 (357-405)||(35524122-35524170)
chr5 (392-455)||(7806457-7806522)
chr5 (357-405)||(23253486-23253534)
chr5 (356-404)||(24565572-24565620)
chr5 (356-404)||(24606608-24606656)
chr5 (357-405)||(39937906-39937954)
chr5 (357-408)||(39466885-39466936)
chr5 (357-399)||(2029053-2029095)
chr5 (357-411)||(16195123-16195177)
chr5 (352-470)||(18925122-18925235)
chr5 (357-399)||(33086729-33086771)
chr5 (357-399)||(40372166-40372208)
chr5 (361-426)||(13541366-13541431)
[»] chr7 (16 HSPs)
chr7 (355-487)||(3315381-3315513)
chr7 (357-460)||(3314955-3315058)
chr7 (351-399)||(767130-767178)
chr7 (357-405)||(24874578-24874626)
chr7 (357-409)||(34808985-34809037)
chr7 (362-406)||(36611556-36611600)
chr7 (357-405)||(41965777-41965825)
chr7 (357-399)||(2403447-2403489)
chr7 (357-399)||(17114145-17114187)
chr7 (357-407)||(35892301-35892351)
chr7 (357-399)||(42818559-42818601)
chr7 (357-399)||(46491694-46491736)
chr7 (357-406)||(30581265-30581314)
chr7 (357-394)||(33261424-33261461)
chr7 (357-405)||(767966-768014)
chr7 (355-399)||(27918616-27918660)
[»] chr4 (19 HSPs)
chr4 (357-450)||(56226462-56226555)
chr4 (355-430)||(56227030-56227105)
chr4 (357-406)||(14527575-14527624)
chr4 (358-406)||(20143280-20143328)
chr4 (357-404)||(24666129-24666176)
chr4 (357-407)||(6056997-6057047)
chr4 (354-384)||(52534987-52535017)
chr4 (357-406)||(21837389-21837438)
chr4 (357-394)||(34941502-34941539)
chr4 (359-419)||(38519172-38519233)
chr4 (352-405)||(51386451-51386504)
chr4 (357-406)||(51387124-51387173)
chr4 (357-405)||(13924793-13924841)
chr4 (361-405)||(18363653-18363697)
chr4 (355-403)||(21527027-21527075)
chr4 (357-405)||(26354232-26354280)
chr4 (357-409)||(34450815-34450867)
chr4 (361-405)||(36599231-36599275)
chr4 (355-399)||(47157385-47157429)
[»] chr1 (18 HSPs)
chr1 (378-455)||(11937720-11937799)
chr1 (414-473)||(11938370-11938429)
chr1 (357-440)||(27745556-27745639)
chr1 (348-404)||(24847774-24847830)
chr1 (361-445)||(32772104-32772188)
chr1 (357-404)||(24848427-24848474)
chr1 (357-404)||(26240872-26240919)
chr1 (357-399)||(16449555-16449597)
chr1 (357-399)||(16459129-16459171)
chr1 (353-399)||(31109235-31109281)
chr1 (360-405)||(5491336-5491381)
chr1 (357-405)||(13416335-13416383)
chr1 (363-426)||(16450444-16450507)
chr1 (363-426)||(16460020-16460083)
chr1 (357-404)||(26240114-26240161)
chr1 (355-405)||(12449312-12449362)
chr1 (357-399)||(31116690-31116732)
chr1 (361-430)||(2260857-2260926)
[»] chr6 (5 HSPs)
chr6 (414-473)||(8554467-8554526)
chr6 (392-451)||(8555064-8555125)
chr6 (357-427)||(13084857-13084927)
chr6 (357-405)||(2138477-2138525)
chr6 (357-405)||(10966380-10966428)
[»] chr2 (5 HSPs)
chr2 (357-399)||(18537499-18537541)
chr2 (357-406)||(20606920-20606969)
chr2 (357-399)||(127741-127783)
chr2 (357-405)||(10173936-10173984)
chr2 (358-406)||(34595933-34595981)
[»] scaffold0627 (1 HSPs)
scaffold0627 (357-405)||(6464-6512)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 47935635 - 47935293
Alignment:
Q  14 aggagcacagatgggtagtggagaagaagcaagtggtcgatttgggttcgcatgttacataagcaatgttagaattaaggattattcaaaagctctcaaa 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47935635 aggaacacagatgggtagtggagaagaagcaagtggtcgatttgggttcgcatgttacataagcaatgttagaattaaggattattcaaaagctctcaaa 47935536  T
Q  114 tatccagcatatgtaactacttatgctgcagaaccatactgttacagtgccctcaatgaagctccatatggacaagatcctgtattttattttggagggg 213  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47935535 tatccagcatatgtaactacttatgctgcagaaccatattgttacagtgccctcaatgaagctccatatggacaagatcctgtattttattttggagggg 47935436  T
Q  214 agggaagaaataattattgtccttgaacccacatattaaatactcacatttatgttttatatattggatattagaatgtttttgacgaacaataaaacta 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  47935435 agggaagaaataattattgtccttgaacccacatattaaatactcacatttatgttttatatattggatgctagaatgtttttgacgaacaataaaacta 47935336  T
Q  314 catgcactaatatttctggaacttgcaatttcacttgttttac 356  Q
     ||||||||||||||||||||||||||||||||||||||||||    
T  47935335 aatgcactaatatttctggaacttgcaatttcacttgttttac 47935293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 47928201 - 47928004
Alignment:
Q  14 aggagcacagatgggtagtggagaagaagcaagtggtcgatttgggttcgcatgttacataagcaatgttagaattaaggattattcaaaagctctcaaa 113  Q
    |||| ||||||||||||||||||| | |||||||||||||||||||  ||||||||||||  | | ||| |||||||| ||||||||| ||||||| ||     
T  47928201 aggaacacagatgggtagtggagatgcagcaagtggtcgatttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaag 47928102  T
Q  114 tatccagcatatgtaactacttatgctgcagaaccatactgttacagtgccctcaatgaagctccatatggacaagatcctgtattttattttggagg 211  Q
    |||||| ||| ||||| |||  |||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| || ||||||||    
T  47928101 tatccatcatttgtaagtacacatgctgcagaaccatattgttacagtgccctcaatgacgctccatatggaaaagatcctgtattctactttggagg 47928004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 47946777 - 47946580
Alignment:
Q  14 aggagcacagatgggtagtggagaagaagcaagtggtcgatttgggttcgcatgttacataagcaatgttagaattaaggattattcaaaagctctcaaa 113  Q
    |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |  ||||| |||||||||||||||||| || |||||||     
T  47946777 aggaacacaaatgggtagtggagaagcagcaagtggtcgatttgggttcgcatgttacatgacaaatgtgagaattaaggattattcagaaactctcaag 47946678  T
Q  114 tatccagcatatgtaactacttatgctgcagaaccatactgttacagtgccctcaatgaagctccatatggacaagatcctgtattttattttggagg 211  Q
    ||||||  || ||||| ||| ||||| |||||||| |||||||||||||||||||| || | || ||||||| |||||||||| || | |||||||||    
T  47946677 tatccacaatttgtaagtacatatgcagcagaaccttactgttacagtgccctcaacgatgttcaatatggaaaagatcctgtcttcttttttggagg 47946580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 47918310 - 47918242
Alignment:
Q  143 agaaccatactgttacagtgccctcaatgaagctccatatggacaagatcctgtattttattttggagg 211  Q
    ||||||||| |||||||||||| ||||||| |||||||||||| ||||||||||||| |||||||||||    
T  47918310 agaaccatattgttacagtgccttcaatgatgctccatatggaaaagatcctgtattctattttggagg 47918242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 430
Target Start/End: Original strand, 54308454 - 54308526
Alignment:
Q  358 gtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataa 430  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||||||  ||||||| || ||||||||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcaccggtgaaccacttattttgaccgttagattaaataa 54308526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 430
Target Start/End: Complemental strand, 18745418 - 18745345
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataa 430  Q
    |||| |||||||| |||||||||||| | |||||||||||||| ||||||  ||||||||||| ||||||||||    
T  18745418 ggtgaattctagggtgagggttcaatcaagtccctcaccggtgcaccactgaatttgaccattagattaaataa 18745345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 362 - 430
Target Start/End: Original strand, 18744625 - 18744693
Alignment:
Q  362 attctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataa 430  Q
    ||||||||||||||||| ||| | |||||||||||||| ||||||  ||||||||||| ||||||||||    
T  18744625 attctaggatgagggtttaatcaagtccctcaccggtgcaccactaaatttgaccattagattaaataa 18744693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 20807937 - 20807984
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  20807937 ggtggattctagggtgagggttcaattaagtccctcaccggtgtacca 20807984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 404
Target Start/End: Complemental strand, 20808658 - 20808608
Alignment:
Q  354 tacggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  20808658 tacggtggattctagggtgagggttcaagtaagtccctcaccggtgtacca 20808608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 4707004 - 4706957
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    ||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  4707004 ggtggattctagggtgagggttctattaagtccctcaccggtgtacca 4706957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 15287567 - 15287616
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccact 406  Q
    ||||||||||||| ||||||| |||||| |||||||||||||| ||||||    
T  15287567 ggtggattctagggtgagggtccaattaagtccctcaccggtggaccact 15287616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 47677523 - 47677568
Alignment:
Q  359 tggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||||    
T  47677523 tggattctaggatgagggttcaattaagtccctcactggtgaacca 47677568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 49350320 - 49350271
Alignment:
Q  355 acggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||| ||||    
T  49350320 acggtggattctagggtgagggttcaattaagtccctcgccggtgaacca 49350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 55375 - 55323
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccacttta 409  Q
    |||| ||||||||||||||||||||||| ||||||||||| |  |||||||||    
T  55375 ggtgaattctaggatgagggttcaattaagtccctcaccgatagaccacttta 55323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 36540088 - 36540008
Alignment:
Q  348 ttgttttacggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaat 428  Q
    |||||||  |||||| |||||| |||||||||||||   ||||||||||| |||||||| | ||| |||||| ||||||||    
T  36540088 ttgttttggggtggactctagggtgagggttcaattgaatccctcaccggcgtaccactcttttttaccattagattaaat 36540008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 399
Target Start/End: Original strand, 49349674 - 49349718
Alignment:
Q  355 acggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||||    
T  49349674 acggtggattctagggtgagggatcaattaagtccctcaccggtg 49349718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 54751796 - 54751843
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    ||||||||||||||||||||||||| || ||| |||| ||||||||||    
T  54751796 ggtggattctaggatgagggttcaaataagtctctcatcggtgtacca 54751843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 407
Target Start/End: Original strand, 3584005 - 3584055
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactt 407  Q
    ||||||||||||| ||||||  ||||||  |||||||||||||||||||||    
T  3584005 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccactt 3584055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 404
Target Start/End: Original strand, 9830573 - 9830619
Alignment:
Q  358 gtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    ||||||||| || |||||||||||||| |||||||||||||| ||||    
T  9830573 gtggattctcgggtgagggttcaattaagtccctcaccggtggacca 9830619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 47571196 - 47571238
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||    
T  47571196 ggtggattctagggtgagggatcaattaagtccctcaccggtg 47571238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 53344017 - 53344059
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    |||||||||||||||||||| ||||| | ||||||||||||||    
T  53344017 ggtggattctaggatgagggatcaatcaagtccctcaccggtg 53344059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 43454210 - 43454161
Alignment:
Q  356 cggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    |||||||||||||| ||||||| |||||| |||||||||| ||| |||||    
T  43454210 cggtggattctagggtgagggtccaattaggtccctcacctgtggaccac 43454161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 47571989 - 47571945
Alignment:
Q  355 acggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    |||||| |||||||| |||||| ||||||| ||||||||||||||    
T  47571989 acggtgaattctagggtgagggatcaattaagtccctcaccggtg 47571945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 357 - 492
Target Start/End: Complemental strand, 33322251 - 33322116
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataagaccatatgaactcattatttgtgac 456  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33322251 ggtggattctaggatgagggttcaattatatccctcacatgtgtacaactttatttgaccattggattaaataagaacatatgaactcattatttgtgac 33322152  T
Q  457 cacattggatctaatatttcatcttcacaactagtt 492  Q
    ||||| ||||||||||||||||||||||| ||||||    
T  33322151 cacatgggatctaatatttcatcttcacacctagtt 33322116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 358 - 451
Target Start/End: Original strand, 33321498 - 33321591
Alignment:
Q  358 gtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataagaccatatgaactcattattt 451  Q
    |||||||||| | ||| |||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||||| ||| || ||||||||||    
T  33321498 gtggattctaaggtgatggttcaattaagtccctcactgatgtaccaatttatttgaccattggattaaataagactataagatctcattattt 33321591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 16911096 - 16911047
Alignment:
Q  355 acggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  16911096 acggtggattctagggtgagggctcaattaagtccctcaccggtgtacca 16911047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 4402335 - 4402284
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccacttt 408  Q
    ||||||||||||| ||||||||| |||| |||||||||||||| ||||||||    
T  4402335 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccacttt 4402284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 202577 - 202619
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  202577 ggtgaattctaggatgagggttcaattaagtccctcaccggtg 202619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 317414 - 317456
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  317414 ggtgaattctaggatgagggttcaattaagtccctcaccggtg 317456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 26847769 - 26847720
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccact 406  Q
    |||||||||||||||||||| ||||||| || ||||||||||| ||||||    
T  26847769 ggtggattctaggatgagggatcaattaagttcctcaccggtgaaccact 26847720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 19220913 - 19220965
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccacttta 409  Q
    |||| ||||||||||||||||||||||| |||| ||||||||  |||||||||    
T  19220913 ggtgaattctaggatgagggttcaattaagtccgtcaccggtagaccacttta 19220965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 26847097 - 26847145
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||||||| ||||||| |||||| |||||||||||||| |||||    
T  26847097 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 26847145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 22633016 - 22632969
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    ||||||||||||| |||||| ||||||| |||||||||||||| ||||    
T  22633016 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 32339948 - 32339995
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    |||||||||||||||||| ||||||||| |||||| |||| |||||||    
T  32339948 ggtggattctaggatgagagttcaattaagtccctgaccgatgtacca 32339995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 35347665 - 35347716
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccacttt 408  Q
    |||||||| |||||||||||||| |||| |||||| ||||||| ||||||||    
T  35347665 ggtggattttaggatgagggttctattaagtcccttaccggtgaaccacttt 35347716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 404
Target Start/End: Original strand, 22632323 - 22632369
Alignment:
Q  358 gtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    |||||||||||| |||||| ||||||| |||||||||||||| ||||    
T  22632323 gtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 40599887 - 40599929
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    |||||||||||||||||||||||||  | ||||||||||||||    
T  40599887 ggtggattctaggatgagggttcaaacaagtccctcaccggtg 40599929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 42094009 - 42094051
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||    
T  42094009 ggtggattctagggtgagggatcaattaagtccctcaccggtg 42094051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 203524 - 203460
Alignment:
Q  362 attctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaa 426  Q
    |||||||| ||||||||||||||  ||| ||| ||||||||||||  |||| |||||| ||||||    
T  203524 attctagggtgagggttcaattaaatccttcatcggtgtaccactaaatttaaccattagattaa 203460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 318361 - 318297
Alignment:
Q  362 attctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaa 426  Q
    |||||||| ||||||||||||||  ||| ||| ||||||||||||  |||| |||||| ||||||    
T  318361 attctagggtgagggttcaattaaatccttcatcggtgtaccactaaatttaaccattagattaa 318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 5434032 - 5434080
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||||||| ||||||| |||||| |||| ||||||||| |||||    
T  5434032 ggtggattctagggtgagggtccaattaagtccttcaccggtggaccac 5434080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 36403073 - 36403025
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||||||  ||||||| |||||| |||||||||||||| |||||    
T  36403073 ggtggattctagagtgagggtccaattaggtccctcaccggtggaccac 36403025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 357 - 487
Target Start/End: Original strand, 29594906 - 29595036
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataagaccatatgaactcattatttgtgac 456  Q
    ||||||||||||| |||||||||||||| || | |||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  29594906 ggtggattctagggtgagggttcaattaagttcttcaccgatgtaccactttatttggtcattggattaaataagaccatatgaactcattatttgtgac 29595005  T
Q  457 cacattggatctaatatttcatcttcacaac 487  Q
    |||||||||||||||||||||||||||||||    
T  29595006 cacattggatctaatatttcatcttcacaac 29595036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 357 - 451
Target Start/End: Complemental strand, 29595642 - 29595548
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataagaccatatgaactcattattt 451  Q
    ||||||||||||  |||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||| ||| || ||||||||||    
T  29595642 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtaccagtttatttgaccattagattaaataagactataagatctcattattt 29595548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 7807111 - 7807052
Alignment:
Q  414 accattggattaaataagaccatatgaactcattatttgtgaccacattggatctaatat 473  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||    
T  7807111 accattggattaaataagaccatatgatctccttattcgtgaccacactggatctaatat 7807052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 427
Target Start/End: Complemental strand, 27345967 - 27345897
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaa 427  Q
    ||||||||||||| |||||||||||||| ||||||||||| | ||||||||  ||||| ||||||||||||    
T  27345967 ggtggattctagggtgagggttcaattaagtccctcaccgatataccacttattttgatcattggattaaa 27345897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 35524122 - 35524170
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    |||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  35524122 ggtggattctaggatgagagttcaattaagtccctcaccggtggaccac 35524170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 455
Target Start/End: Original strand, 7806457 - 7806522
Alignment:
Q  392 caccggtgtaccac--tttatttgaccattggattaaataagaccatatgaactcattatttgtga 455  Q
    ||||||||||||||  | |||||||||||||||||||||||||| ||| || ||| ||||||||||    
T  7806457 caccggtgtaccacactatatttgaccattggattaaataagactataggatctccttatttgtga 7806522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 23253534 - 23253486
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||||||| ||||||| |||||| |||||||||||||| |||||    
T  23253534 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 23253486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 24565572 - 24565620
Alignment:
Q  356 cggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    |||||||||||||| ||||||||||||||  ||||||||||||| ||||    
T  24565572 cggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 24606608 - 24606656
Alignment:
Q  356 cggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    |||||||||||||| ||||||||||||||  ||||||||||||| ||||    
T  24606608 cggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 39937954 - 39937906
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||||||| |||||||||| ||| |||||||||||||| |||||    
T  39937954 ggtggattctagggtgagggttcagttaagtccctcaccggtggaccac 39937906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 39466885 - 39466936
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccacttt 408  Q
    |||| |||||||| ||||||| |||||| |||||||||||||| ||||||||    
T  39466885 ggtgaattctagggtgagggtccaattaagtccctcaccggtggaccacttt 39466936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 2029095 - 2029053
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||    
T  2029095 ggtggattctagggtgagggctcaattaagtccctcaccggtg 2029053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 16195177 - 16195123
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatt 411  Q
    ||||||||||||| |||||| ||||||| |||| |||| |||||||||| |||||    
T  16195177 ggtggattctagggtgagggatcaattaagtccatcactggtgtaccacattatt 16195123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 470
Target Start/End: Complemental strand, 18925235 - 18925122
Alignment:
Q  352 tttacggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataagaccatatgaactcattattt 451  Q
    |||| |||||||||||||||||| |||||||||  |||||||||  ||||||| |   |||| |||||  ||||||||     |||||| || |||||||    
T  18925235 tttatggtggattctaggatgagagttcaattaaatccctcacctatgtaccaatcactttgtccattaaattaaata-----atatgatcttattattt 18925141  T
Q  452 gtgaccacattggatctaa 470  Q
    ||||||||| || ||||||    
T  18925140 gtgaccacactgaatctaa 18925122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 33086729 - 33086771
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    |||||||||||||||||||| ||||||| |||| |||||||||    
T  33086729 ggtggattctaggatgagggatcaattaagtccttcaccggtg 33086771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 40372208 - 40372166
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||| |||||||||||||| || |||||||||||    
T  40372208 ggtggattctagggtgagggttcaattaagttcctcaccggtg 40372166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 426
Target Start/End: Original strand, 13541366 - 13541431
Alignment:
Q  361 gattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaa 426  Q
    |||||||||||||||| ||||| | ||| || | |||||||||| |||| ||||||||| ||||||    
T  13541366 gattctaggatgagggatcaatcaagtctcttatcggtgtaccattttaattgaccattagattaa 13541431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 355 - 487
Target Start/End: Complemental strand, 3315513 - 3315381
Alignment:
Q  355 acggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataagaccatatgaactcattatttgtg 454  Q
    ||||||||||||| | |||||| ||||||| ||||||||||||| || ||||| |||| ||||| |||||||||||||||||||||||||||||||||||    
T  3315513 acggtggattctaaggtgagggctcaattaagtccctcaccggtataacacttaatttaaccatcggattaaataagaccatatgaactcattatttgtg 3315414  T
Q  455 accacattggatctaatatttcatcttcacaac 487  Q
    |||||||||||||||||||||||||||||||||    
T  3315413 accacattggatctaatatttcatcttcacaac 3315381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 357 - 460
Target Start/End: Original strand, 3314955 - 3315058
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataagaccatatgaactcattatttgtgac 456  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | ||||||  | |||||||||| | ||    
T  3314955 ggtggattctacggtgagggttcaattaagtccctcaccggtgtaccactttatttaaccattggattaaatgaaaccatactatctcattatttataac 3315054  T
Q  457 caca 460  Q
    ||||    
T  3315055 caca 3315058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 767130 - 767178
Alignment:
Q  351 ttttacggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  767130 ttttacggtggattctagggtgagggtccaattaagtccctcaccggtg 767178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 24874626 - 24874578
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||||||| |||||||||||||| |||||||| ||||| |||||    
T  24874626 ggtggattctagggtgagggttcaattaggtccctcatcggtggaccac 24874578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 34809037 - 34808985
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccacttta 409  Q
    ||||||||||||  |||||||||||||| |||| ||| |||||||||||||||    
T  34809037 ggtggattctagagtgagggttcaattaagtccttcatcggtgtaccacttta 34808985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 36611556 - 36611600
Alignment:
Q  362 attctaggatgagggttcaattatgtccctcaccggtgtaccact 406  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||    
T  36611556 attctagggtgagggttcaattaagtccctcaccggtgaaccact 36611600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 41965825 - 41965777
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||||||| ||||||| |||||| |||||||||||||| |||||    
T  41965825 ggtggattctagggtgagggtccaattaagtccctcaccggtggaccac 41965777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 2403489 - 2403447
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    |||| |||||||||||||||||||| || ||||||||||||||    
T  2403489 ggtgaattctaggatgagggttcaactaagtccctcaccggtg 2403447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 17114145 - 17114187
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||| |||||||||||||| |||||||| |||||    
T  17114145 ggtggattctagggtgagggttcaattaagtccctcatcggtg 17114187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 407
Target Start/End: Complemental strand, 35892351 - 35892301
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactt 407  Q
    ||||||||||||| ||||||  ||||||  |||||||||||||||||||||    
T  35892351 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccactt 35892301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 42818601 - 42818559
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    |||| |||||||| |||||||||||||| ||||||||||||||    
T  42818601 ggtgaattctagggtgagggttcaattaagtccctcaccggtg 42818559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 46491736 - 46491694
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||| ||||||||||| || ||||||||||||||    
T  46491736 ggtggattctagggtgagggttcaactaagtccctcaccggtg 46491694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 30581314 - 30581265
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccact 406  Q
    |||| |||||||| |||||||||||||| |||||||||| ||| ||||||    
T  30581314 ggtgaattctagggtgagggttcaattaagtccctcaccagtgaaccact 30581265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 33261461 - 33261424
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcac 394  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  33261461 ggtggattctaggatgagggtccaattaagtccctcac 33261424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 768014 - 767966
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    |||||||| |||| ||||||| |||||| |||||||||||||| |||||    
T  768014 ggtggattttagggtgagggtccaattaagtccctcaccggtggaccac 767966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 27918660 - 27918616
Alignment:
Q  355 acggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    |||||| ||| |||||||||||| |||||| ||||||||||||||    
T  27918660 acggtgaattttaggatgagggtccaattaggtccctcaccggtg 27918616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 450
Target Start/End: Original strand, 56226462 - 56226555
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataagaccatatgaactcattatt 450  Q
    ||||||||||| |||||||| ||||||| ||| ||||||| ||||||||||||||| |||||| |||| |||||||||||| || || ||||||    
T  56226462 ggtggattctaagatgagggatcaattaagtctctcaccgatgtaccactttatttaaccattagatttaataagaccataggatctaattatt 56226555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 430
Target Start/End: Complemental strand, 56227105 - 56227030
Alignment:
Q  355 acggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataa 430  Q
    ||||||||||||||  |||||| ||||| | |||| |||||||||||||||||||||| ||| ||||||| |||||    
T  56227105 acggtggattctagagtgagggctcaatgaagtccttcaccggtgtaccactttatttaaccgttggatttaataa 56227030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 14527624 - 14527575
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccact 406  Q
    ||||||||||||| |||||| ||||||| |||||||||||||| ||||||    
T  14527624 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccact 14527575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 20143280 - 20143328
Alignment:
Q  358 gtggattctaggatgagggttcaattatgtccctcaccggtgtaccact 406  Q
    |||||||||||| |||||| |||| || |||||||||||||||||||||    
T  20143280 gtggattctagggtgagggctcaactaagtccctcaccggtgtaccact 20143328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 24666129 - 24666176
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    ||||||||||||| |||||| ||||||| |||||||||||||| ||||    
T  24666129 ggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 24666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 407
Target Start/End: Complemental strand, 6057047 - 6056997
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactt 407  Q
    ||||||||||||| ||||||||| | || |||||||||||||| |||||||    
T  6057047 ggtggattctagggtgagggttctactaagtccctcaccggtggaccactt 6056997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 52534987 - 52535017
Alignment:
Q  354 tacggtggattctaggatgagggttcaatta 384  Q
    |||||||||||||||||||||||||||||||    
T  52534987 tacggtggattctaggatgagggttcaatta 52535017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 21837389 - 21837438
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccact 406  Q
    ||||||||||||| ||||||| ||| || ||||||||||||| |||||||    
T  21837389 ggtggattctagggtgagggtccaactaagtccctcaccggtttaccact 21837438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 34941502 - 34941539
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcac 394  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  34941502 ggtggattctagggtgagggttcaattaagtccctcac 34941539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 419
Target Start/End: Complemental strand, 38519233 - 38519172
Alignment:
Q  359 tggattctaggatgagggttcaattatgtccctcaccggtgtaccactt-tatttgaccatt 419  Q
    ||||||||||| ||| ||  |||||| |||||||||||||||||||||| ||||| ||||||    
T  38519233 tggattctagggtgaaggagcaattaagtccctcaccggtgtaccacttatattttaccatt 38519172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 51386451 - 51386504
Alignment:
Q  352 tttacggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    |||| |||||||| |||| |||||||||||||| |||||||||| ||| |||||    
T  51386451 tttatggtggattttagggtgagggttcaattaagtccctcaccagtgaaccac 51386504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 51387173 - 51387124
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccact 406  Q
    |||||||| |||| |||||| ||||||| |||||||||||||| ||||||    
T  51387173 ggtggattatagggtgagggatcaattacgtccctcaccggtgaaccact 51387124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 13924793 - 13924841
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||||||| |||||| |||||||  ||||||||||||| |||||    
T  13924793 ggtggattctagggtgagggctcaattaaatccctcaccggtggaccac 13924841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 18363697 - 18363653
Alignment:
Q  361 gattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||| |||||||||||||| || ||||||||||| |||||    
T  18363697 gattctagggtgagggttcaattaagttcctcaccggtggaccac 18363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 21527075 - 21527027
Alignment:
Q  355 acggtggattctaggatgagggttcaattatgtccctcaccggtgtacc 403  Q
    ||||||||||||||| |||||| || |||| ||||||||||| ||||||    
T  21527075 acggtggattctagggtgagggctctattaagtccctcaccgttgtacc 21527027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 26354280 - 26354232
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||| ||||||| |||||||||||||| ||||||||| |||| |||||    
T  26354280 ggtgggttctagggtgagggttcaattaagtccctcacaggtggaccac 26354232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 34450815 - 34450867
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccacttta 409  Q
    |||| |||||||| |||||| ||||||| |||||||||||||| | |||||||    
T  34450815 ggtgaattctagggtgagggatcaattaagtccctcaccggtggagcacttta 34450867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 36599231 - 36599275
Alignment:
Q  361 gattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||| |||||||||||||| || ||||||||||| |||||    
T  36599231 gattctagggtgagggttcaattaagttcctcaccggtggaccac 36599275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 47157429 - 47157385
Alignment:
Q  355 acggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    |||||| |||||||| ||||||||||||||  |||||||||||||    
T  47157429 acggtgaattctagggtgagggttcaattaaatccctcaccggtg 47157385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 11937720 - 11937799
Alignment:
Q  378 tcaattatgtccctcaccggtgtaccac--tttatttgaccattggattaaataagaccatatgaactcattatttgtga 455  Q
    |||||||  |||||||||||||||||||  | |||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  11937720 tcaattaaatccctcaccggtgtaccacactatatttgaccattggattaaataagactatatgatctccttatttgtga 11937799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 11938429 - 11938370
Alignment:
Q  414 accattggattaaataagaccatatgaactcattatttgtgaccacattggatctaatat 473  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||    
T  11938429 accattggattaaataagaccatatgatctccttattcgtgaccacactggatctaatat 11938370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 357 - 440
Target Start/End: Original strand, 27745556 - 27745639
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataagaccatatga 440  Q
    ||||||||||| | |||||||||||||| ||||||||||| | |||||||||| |||| |||| ||||||||||| | ||||||    
T  27745556 ggtggattctaaggtgagggttcaattaagtccctcaccgatataccactttaattgatcattagattaaataagtctatatga 27745639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 24847774 - 24847830
Alignment:
Q  348 ttgttttacggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    ||||||| |||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  24847774 ttgttttgcggtggattctagggtgagggttctattaagtccctcaccggtgtacca 24847830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 445
Target Start/End: Original strand, 32772104 - 32772188
Alignment:
Q  361 gattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataagaccatatgaactca 445  Q
    ||||||| | |||||| ||||||| | ||||||||| |||||||||||| ||||||||| ||||||||||| | |||||| ||||    
T  32772104 gattctaaggtgagggctcaattaagcccctcaccgatgtaccactttaattgaccattagattaaataagtctatatgatctca 32772188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 24848474 - 24848427
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    ||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  24848474 ggtggattctagggtgagggttctattaagtccctcaccggtgtacca 24848427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 26240919 - 26240872
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    ||||||||||||| |||||||||||||| |||||||||||||| ||||    
T  26240919 ggtggattctagggtgagggttcaattaagtccctcaccggtggacca 26240872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 16449555 - 16449597
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||| |||||||||||||| ||||||||||||||    
T  16449555 ggtggattctagggtgagggttcaattaagtccctcaccggtg 16449597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 16459129 - 16459171
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||| |||||||||||||| ||||||||||||||    
T  16459129 ggtggattctagggtgagggttcaattaagtccctcaccggtg 16459171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 31109235 - 31109281
Alignment:
Q  353 ttacggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  31109235 ttacggtggattctagggtgagggtccaattaggtccctcaccggtg 31109281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 5491381 - 5491336
Alignment:
Q  360 ggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||    
T  5491381 ggattctaggatgagggtccaattaggtccctcaccggtggaccac 5491336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 13416383 - 13416335
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||||||||||||||| |||||| ||||||| |||||| |||||    
T  13416383 ggtggattctaggatgagggtccaattaggtccctcgccggtggaccac 13416335  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 16450507 - 16450444
Alignment:
Q  363 ttctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaa 426  Q
    ||||||| ||||||||||||||  |||||||| |||||||||||  |||| |||||| ||||||    
T  16450507 ttctagggtgagggttcaattaaatccctcactggtgtaccactaaatttaaccattagattaa 16450444  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 16460083 - 16460020
Alignment:
Q  363 ttctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaa 426  Q
    ||||||| ||||||||||||||  |||||||| |||||||||||  |||| |||||| ||||||    
T  16460083 ttctagggtgagggttcaattaaatccctcactggtgtaccactaaatttaaccattagattaa 16460020  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 26240114 - 26240161
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtacca 404  Q
    ||||||||||||| |||||| ||||||| |||||||||||||| ||||    
T  26240114 ggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 26240161  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 12449362 - 12449312
Alignment:
Q  355 acggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    |||||||||| |||| |||||| ||||||| |||||||||||||| |||||    
T  12449362 acggtggattttagggtgagggatcaattaagtccctcaccggtggaccac 12449312  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 31116732 - 31116690
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||    
T  31116732 ggtggattctagggtgagggtccaattaggtccctcaccggtg 31116690  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 430
Target Start/End: Original strand, 2260857 - 2260926
Alignment:
Q  361 gattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaataa 430  Q
    ||||||||| |||||||||||| | ||||||||||||| ||||| |||  | || ||||| |||||||||    
T  2260857 gattctagggtgagggttcaatcaagtccctcaccggtataccattttgatcgatcattgaattaaataa 2260926  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 473
Target Start/End: Original strand, 8554467 - 8554526
Alignment:
Q  414 accattggattaaataagaccatatgaactcattatttgtgaccacattggatctaatat 473  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||    
T  8554467 accattggattaaataagaccatatgatctccttattcgtgaccacactggatctaatat 8554526  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 451
Target Start/End: Complemental strand, 8555125 - 8555064
Alignment:
Q  392 caccggtgtaccac--tttatttgaccattggattaaataagaccatatgaactcattattt 451  Q
    ||||||||||||||  | |||||||||||||||||||||||||| ||| || ||| ||||||    
T  8555125 caccggtgtaccacactatatttgaccattggattaaataagactataggatctccttattt 8555064  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 427
Target Start/End: Complemental strand, 13084927 - 13084857
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccactttatttgaccattggattaaa 427  Q
    |||| |||||||| ||||||||||| || ||| |||||||||||||||||   ||||||| || |||||||    
T  13084927 ggtgaattctagggtgagggttcaactaagtctctcaccggtgtaccactaactttgacctttagattaaa 13084857  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 2138477 - 2138525
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    |||| |||||||| ||||||| |||||| |||||||||||||| |||||    
T  2138477 ggtgaattctagggtgagggtccaattaggtccctcaccggtggaccac 2138525  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 10966428 - 10966380
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||||||| ||| ||| |||||| |||||||||||||| |||||    
T  10966428 ggtggattctagggtgaaggtccaattaggtccctcaccggtggaccac 10966380  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 18537541 - 18537499
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||| |||||||||||||||| ||||||||||||||    
T  18537541 ggtggattctatgatgagggttcaattaagtccctcaccggtg 18537499  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 20606969 - 20606920
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccact 406  Q
    |||| |||||||| |||||||||||||| |||||||||||||| ||||||    
T  20606969 ggtgaattctagggtgagggttcaattaagtccctcaccggtgaaccact 20606920  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 127783 - 127741
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtg 399  Q
    ||||||||||||| |||||||||||||| |||| |||||||||    
T  127783 ggtggattctagggtgagggttcaattaagtccttcaccggtg 127741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 10173936 - 10173984
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||||||||||| |||||||||  ||| |||||||||||||| |||||    
T  10173936 ggtggattctagggtgagggttctgttaagtccctcaccggtgaaccac 10173984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 34595981 - 34595933
Alignment:
Q  358 gtggattctaggatgagggttcaattatgtccctcaccggtgtaccact 406  Q
    |||||||||||  ||||||||||| ||  ||||||||||||||||||||    
T  34595981 gtggattctagagtgagggttcaactaaatccctcaccggtgtaccact 34595933  T

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Target: scaffold0627 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 6464 - 6512
Alignment:
Q  357 ggtggattctaggatgagggttcaattatgtccctcaccggtgtaccac 405  Q
    ||||| ||||||| |||||||||||||| ||||||||||| || |||||    
T  6464 ggtgggttctagggtgagggttcaattaagtccctcaccgatggaccac 6512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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