View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10210_low_1 (Length: 860)
Name: NF10210_low_1
Description: NF10210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10210_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 797; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 797; E-Value: 0
Query Start/End: Original strand, 16 - 860
Target Start/End: Original strand, 3109922 - 3110765
Alignment:
| Q |
16 |
ccggtgtcccttagcttaccaaccgagctgcttacttgggacgcagatttttgtagtagaggtttatttagtgagcttagcaattatacaaactccagtc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3109922 |
ccggtgtcccttagcttaccaaccgagctgcttacttgggacgcagatttttgtagtagaggtttatttagtgagcttagcaattatacaaactccagtc |
3110021 |
T |
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| Q |
116 |
aaagatgcctttaaaaaattgtttagtggagacaccacaaactagtggagtctttgtctatgtttccatttttatatggggtcaaattatgaatagtggc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3110022 |
aaagatgcctttaaaaaattgtttagtggagacaccacaaactagtggagtctttgtctatgtttccatttttatatgcggtcaaattatgaatagtggc |
3110121 |
T |
|
| Q |
216 |
ttgttcaagaaaggaatagaaactttgtttcatacaaaaggacttaatcaaaccaatatttatttcctaaattggatataagtcaagacaaaatcattgg |
315 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110122 |
ttgttcaagagaggaatataaactttgtttcatacaaaaggacttaatcaaaccaatatttatttcctaaattggatataagtcaagacaaaatcattgg |
3110221 |
T |
|
| Q |
316 |
tgtgaaaagtgaggattaagtttggagggttggtggattttcaaactttcacgtttcttagaaaaggaaaaaatggttggtgaaagtctatggcagtaca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3110222 |
tgtgaaaagtgaggattaagtttggagggttggtggattttcaaactttcacgtttcttagaaaaggaaaaaatggttggtgaaactctatggcagtaca |
3110321 |
T |
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| Q |
416 |
gtgatatacttcattgcagcaaatagtgtgtgaaactggagaaaatcacagtagtattctttattttgggtcgtggttactggtttctacttaggaaaca |
515 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110322 |
gtgatatacttcattgcagcaaataatgtgtgaaactgaagaaaatcacagtagtattctttattttgggtcgtggttactggtttctacttaggaaaca |
3110421 |
T |
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| Q |
516 |
aagggcatgggattagtttaaggaaaatttggttgatctgtaatagtgttgtccatcgtagattgcggaaaatagcggtttattcaaaacacttttagta |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3110422 |
aagggcatgggattagtttaaggaaaatttggttgatctgtaatagtgttgtccatcgtagattgcggaaaatagcggtttattcaaaacac-tttagta |
3110520 |
T |
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| Q |
616 |
ttatagcgccgctatagccactatttgacaacgctttgtactaaattgtgtaatgcccaacaacaattgtttgttcaaattctgccatgttgtaacacta |
715 |
Q |
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| T |
3110521 |
ttatagcgccgctatagccactatttgacaacgctttgtactaaatagtgtaatgcccaacaacaattgtttgttcaaattctgccatgttgtaacacta |
3110620 |
T |
|
| Q |
716 |
ttgccgccatcagaatcactcttagttttcattctgcaatagtcatacagtgatttcgatagcagtatcttatttcataagcaaacgagtcttacctgaa |
815 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110621 |
ttgccgccatcagaatcactcttagttttcattctgcaatattcatacagtgatttcgatagcagtatcttatttcataagcaaacgagtcttacctgaa |
3110720 |
T |
|
| Q |
816 |
ctgaactgttgcctggaaatattattttgcctcaattctggctgc |
860 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
3110721 |
ctgaacttttacctggaaatattattttgcctcaattctggctgc |
3110765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 661
Target Start/End: Complemental strand, 32889016 - 32888971
Alignment:
| Q |
616 |
ttatagcgccgctatagccactatttgacaacgctttgtactaaat |
661 |
Q |
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| T |
32889016 |
ttatagcgccgcaatagccactatttgacaatactttgtactaaat |
32888971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 617 - 661
Target Start/End: Original strand, 8936736 - 8936780
Alignment:
| Q |
617 |
tatagcgccgctatagccactatttgacaacgctttgtactaaat |
661 |
Q |
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| T |
8936736 |
tatagcgccgctatagccattatttgacaacactttgttctaaat |
8936780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 661
Target Start/End: Original strand, 1138433 - 1138468
Alignment:
| Q |
626 |
gctatagccactatttgacaacgctttgtactaaat |
661 |
Q |
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| T |
1138433 |
gctatagccactatttgacaactctttgtactaaat |
1138468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 667
Target Start/End: Original strand, 38692426 - 38692467
Alignment:
| Q |
626 |
gctatagccactatttgacaacgctttgtactaaattgtgta |
667 |
Q |
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||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
38692426 |
gctatagccgctatttgacaacactttgtactaaatcgtgta |
38692467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 617 - 661
Target Start/End: Original strand, 6025952 - 6025996
Alignment:
| Q |
617 |
tatagcgccgctatagccactatttgacaacgctttgtactaaat |
661 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
6025952 |
tatagcgctgctatagccactatttgacaacattttgtactaaat |
6025996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 661
Target Start/End: Complemental strand, 1118976 - 1118943
Alignment:
| Q |
628 |
tatagccactatttgacaacgctttgtactaaat |
661 |
Q |
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| T |
1118976 |
tatagccactatttgacaacactttgtactaaat |
1118943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 611 - 661
Target Start/End: Complemental strand, 2733021 - 2732971
Alignment:
| Q |
611 |
tagtattatagcgccgctatagccactatttgacaacgctttgtactaaat |
661 |
Q |
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||||||||||||||| ||||||| |||||||||||| |||||||||||| |
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| T |
2733021 |
tagtattatagcgcctctatagctgctatttgacaacattttgtactaaat |
2732971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 661
Target Start/End: Original strand, 2730831 - 2730864
Alignment:
| Q |
628 |
tatagccactatttgacaacgctttgtactaaat |
661 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
2730831 |
tatagccactatttgacaacactttgtactaaat |
2730864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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