View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10210_low_11 (Length: 239)
Name: NF10210_low_11
Description: NF10210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10210_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 42481821 - 42481629
Alignment:
| Q |
1 |
tcataaataattaattttacaattagatcaataaatctcattgt--aattaaataatatatgacaaaacttctttgaaaatttggtattcaactcaagaa |
98 |
Q |
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| T |
42481821 |
tcataaataattaattttacaattagatcaataaatctcattgtttaattaaataatatatgacaaaacttctttgaaaatttggtattcaactcaagaa |
42481722 |
T |
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| Q |
99 |
tcgactaatcggaatggtac-ataaaaccatccatttaggtggtcccaactttatccaggactttgtccataccgaccaaaacaaaactatga |
190 |
Q |
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| T |
42481721 |
tcgactaatcggaatggtacaatcaaaccatccatttaggtggtctcaactttatccaggactttgtccatacagaccaaaacaaaactatga |
42481629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 42481610 - 42481580
Alignment:
| Q |
193 |
tgtatgcaactgcaacacatttgggtataat |
223 |
Q |
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| T |
42481610 |
tgtatgcaactgcaacacatttgggtataat |
42481580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 15971085 - 15971121
Alignment:
| Q |
71 |
tttgaaaatttggtattcaactcaagaatcgactaat |
107 |
Q |
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| T |
15971085 |
tttgaaaatttggtattcgattcaagaatcgactaat |
15971121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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