View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10210_low_15 (Length: 231)

Name: NF10210_low_15
Description: NF10210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10210_low_15
NF10210_low_15
[»] chr8 (18 HSPs)
chr8 (30-110)||(12464733-12464815)
chr8 (137-215)||(29510339-29510417)
chr8 (131-215)||(22651922-22652006)
chr8 (131-199)||(13436993-13437061)
chr8 (131-215)||(2572085-2572169)
chr8 (131-194)||(25192376-25192439)
chr8 (138-215)||(24857955-24858032)
chr8 (137-215)||(926823-926901)
chr8 (137-215)||(4673460-4673537)
chr8 (131-188)||(4298915-4298972)
chr8 (131-188)||(20873042-20873099)
chr8 (139-199)||(22197779-22197839)
chr8 (131-215)||(44067462-44067546)
chr8 (131-190)||(27213518-27213577)
chr8 (139-188)||(28745471-28745520)
chr8 (174-215)||(43737885-43737926)
chr8 (143-215)||(24362243-24362315)
chr8 (137-181)||(36450789-36450833)
[»] chr4 (20 HSPs)
chr4 (29-113)||(8777496-8777582)
chr4 (131-215)||(23293015-23293099)
chr4 (29-113)||(4876301-4876387)
chr4 (29-112)||(21527147-21527232)
chr4 (131-194)||(21945470-21945533)
chr4 (138-215)||(20633431-20633508)
chr4 (131-215)||(12895303-12895387)
chr4 (131-214)||(847898-847981)
chr4 (28-108)||(31189042-31189124)
chr4 (131-205)||(35158014-35158088)
chr4 (138-188)||(49430998-49431048)
chr4 (131-215)||(19482614-19482698)
chr4 (131-215)||(24343453-24343537)
chr4 (138-194)||(28084488-28084544)
chr4 (152-195)||(5414222-5414265)
chr4 (131-198)||(20521878-20521945)
chr4 (138-181)||(30298926-30298969)
chr4 (138-181)||(30327794-30327837)
chr4 (138-205)||(31603045-31603112)
chr4 (139-188)||(28720849-28720898)
[»] scaffold0003 (4 HSPs)
scaffold0003 (29-112)||(17634-17719)
scaffold0003 (29-112)||(31780-31865)
scaffold0003 (29-112)||(37977-38062)
scaffold0003 (131-194)||(241561-241624)
[»] chr7 (17 HSPs)
chr7 (29-112)||(16428921-16429006)
chr7 (131-215)||(25481848-25481932)
chr7 (131-215)||(11061105-11061189)
chr7 (131-194)||(24339609-24339672)
chr7 (137-188)||(24105651-24105702)
chr7 (131-215)||(5409865-5409949)
chr7 (132-215)||(1433400-1433483)
chr7 (131-194)||(13770658-13770721)
chr7 (131-194)||(27945008-27945071)
chr7 (131-194)||(43027498-43027561)
chr7 (131-194)||(43249960-43250023)
chr7 (131-215)||(1885519-1885603)
chr7 (131-190)||(11722127-11722186)
chr7 (165-215)||(9778454-9778504)
chr7 (131-193)||(26733272-26733334)
chr7 (131-215)||(17851377-17851461)
chr7 (131-215)||(30730983-30731067)
[»] chr2 (33 HSPs)
chr2 (29-113)||(7692944-7693030)
chr2 (38-113)||(19793546-19793623)
chr2 (29-113)||(13806893-13806979)
chr2 (29-112)||(35672589-35672674)
chr2 (30-113)||(27095549-27095634)
chr2 (28-111)||(38459419-38459504)
chr2 (138-194)||(19536434-19536490)
chr2 (29-113)||(8360041-8360127)
chr2 (137-194)||(20539709-20539766)
chr2 (66-111)||(27499621-27499666)
chr2 (131-215)||(21374728-21374807)
chr2 (131-215)||(21616708-21616792)
chr2 (138-194)||(21624233-21624289)
chr2 (29-90)||(24318319-24318382)
chr2 (152-188)||(28596445-28596481)
chr2 (131-215)||(30335363-30335447)
chr2 (131-215)||(31283994-31284078)
chr2 (131-215)||(34337205-34337289)
chr2 (131-194)||(38117188-38117245)
chr2 (28-76)||(29650899-29650949)
chr2 (137-215)||(18276467-18276545)
chr2 (131-181)||(37558957-37559007)
chr2 (131-180)||(12668452-12668501)
chr2 (174-211)||(17442055-17442092)
chr2 (131-188)||(18841042-18841099)
chr2 (138-215)||(23058479-23058556)
chr2 (131-180)||(24894370-24894419)
chr2 (131-188)||(30404879-30404936)
chr2 (139-183)||(6940233-6940277)
chr2 (138-186)||(14996260-14996308)
chr2 (131-191)||(15657834-15657894)
chr2 (137-193)||(15972841-15972897)
chr2 (138-170)||(27460017-27460049)
[»] scaffold0884 (1 HSPs)
scaffold0884 (28-113)||(609-696)
[»] chr5 (26 HSPs)
chr5 (138-215)||(15382423-15382500)
chr5 (131-215)||(21522696-21522780)
chr5 (131-215)||(21533262-21533346)
chr5 (131-199)||(42469183-42469251)
chr5 (131-194)||(22013381-22013444)
chr5 (131-193)||(21191085-21191147)
chr5 (131-193)||(36642791-36642853)
chr5 (131-212)||(13287428-13287509)
chr5 (139-196)||(22299517-22299574)
chr5 (131-199)||(31084291-31084353)
chr5 (32-110)||(31132310-31132390)
chr5 (131-191)||(19552572-19552632)
chr5 (131-191)||(24906330-24906390)
chr5 (131-215)||(41995417-41995501)
chr5 (131-194)||(6247589-6247652)
chr5 (131-181)||(14674249-14674299)
chr5 (137-194)||(19820429-19820486)
chr5 (138-190)||(4105228-4105280)
chr5 (131-199)||(6326326-6326394)
chr5 (131-215)||(19579647-19579731)
chr5 (156-215)||(6401444-6401503)
chr5 (131-177)||(8420011-8420057)
chr5 (145-215)||(15410491-15410561)
chr5 (137-215)||(17177058-17177136)
chr5 (138-188)||(30135286-30135336)
chr5 (139-188)||(41633708-41633757)
[»] chr1 (29 HSPs)
chr1 (29-113)||(6183356-6183442)
chr1 (29-113)||(21876060-21876146)
chr1 (137-194)||(40917718-40917775)
chr1 (131-215)||(398794-398878)
chr1 (131-215)||(6612200-6612284)
chr1 (131-215)||(1486738-1486822)
chr1 (152-215)||(10577785-10577848)
chr1 (139-194)||(48040499-48040554)
chr1 (138-215)||(13011252-13011329)
chr1 (131-188)||(48450616-48450673)
chr1 (131-215)||(7918240-7918324)
chr1 (131-214)||(9709767-9709850)
chr1 (156-215)||(48548016-48548075)
chr1 (165-215)||(18190163-18190213)
chr1 (137-215)||(42359484-42359562)
chr1 (137-194)||(5927375-5927432)
chr1 (138-199)||(5944243-5944304)
chr1 (138-215)||(18471244-18471321)
chr1 (131-215)||(2896150-2896234)
chr1 (131-215)||(9103586-9103670)
chr1 (137-181)||(46348418-46348462)
chr1 (131-170)||(113290-113329)
chr1 (131-190)||(1262855-1262914)
chr1 (131-181)||(18556485-18556535)
chr1 (139-188)||(14359558-14359607)
chr1 (131-179)||(12443489-12443537)
chr1 (131-199)||(15323125-15323193)
chr1 (131-187)||(21378552-21378608)
chr1 (131-215)||(34298382-34298466)
[»] chr6 (31 HSPs)
chr6 (137-215)||(9107405-9107483)
chr6 (32-113)||(24475333-24475416)
chr6 (137-215)||(7938062-7938140)
chr6 (131-215)||(16766643-16766727)
chr6 (131-194)||(34595101-34595164)
chr6 (137-215)||(8777008-8777086)
chr6 (131-212)||(7977859-7977940)
chr6 (131-215)||(426543-426627)
chr6 (131-194)||(853888-853951)
chr6 (29-112)||(27966102-27966186)
chr6 (131-188)||(12696297-12696354)
chr6 (143-215)||(9027124-9027196)
chr6 (131-215)||(10339155-10339239)
chr6 (131-213)||(4118362-4118444)
chr6 (143-215)||(10294053-10294125)
chr6 (139-194)||(3398586-3398641)
chr6 (138-185)||(4877918-4877965)
chr6 (132-215)||(5000656-5000739)
chr6 (131-194)||(8365548-8365611)
chr6 (131-193)||(9629351-9629413)
chr6 (131-181)||(17841618-17841668)
chr6 (138-211)||(3209332-3209404)
chr6 (131-188)||(16833281-16833338)
chr6 (131-188)||(33001318-33001375)
chr6 (152-215)||(18367783-18367845)
chr6 (137-215)||(1681704-1681782)
chr6 (131-205)||(5732539-5732613)
chr6 (135-193)||(6389711-6389769)
chr6 (131-188)||(10770703-10770760)
chr6 (131-188)||(31959132-31959189)
chr6 (143-215)||(2386742-2386814)
[»] scaffold0027 (1 HSPs)
scaffold0027 (131-215)||(46628-46712)
[»] chr3 (35 HSPs)
chr3 (131-215)||(3164054-3164138)
chr3 (139-215)||(35994774-35994850)
chr3 (137-215)||(15796329-15796407)
chr3 (139-215)||(7171448-7171524)
chr3 (139-215)||(10335323-10335399)
chr3 (131-215)||(24205070-24205154)
chr3 (29-109)||(9010614-9010696)
chr3 (131-194)||(28917968-28918031)
chr3 (32-113)||(7424178-7424261)
chr3 (139-199)||(14829652-14829712)
chr3 (131-215)||(16000045-16000129)
chr3 (131-194)||(8587050-8587113)
chr3 (131-215)||(750647-750732)
chr3 (131-188)||(14979154-14979211)
chr3 (32-113)||(39291481-39291564)
chr3 (137-215)||(21479070-21479142)
chr3 (137-188)||(26492240-26492291)
chr3 (131-194)||(55401042-55401105)
chr3 (137-199)||(8383219-8383281)
chr3 (138-215)||(14747513-14747584)
chr3 (131-193)||(25064877-25064939)
chr3 (131-188)||(26508083-26508140)
chr3 (138-181)||(3865592-3865635)
chr3 (131-170)||(4987320-4987359)
chr3 (139-215)||(10318071-10318153)
chr3 (131-170)||(40052323-40052362)
chr3 (140-194)||(41961688-41961742)
chr3 (131-192)||(3610602-3610663)
chr3 (131-204)||(4990996-4991069)
chr3 (174-215)||(14027961-14028002)
chr3 (131-196)||(16789679-16789744)
chr3 (131-183)||(10268515-10268567)
chr3 (137-193)||(12674536-12674592)
chr3 (131-179)||(14832081-14832129)
chr3 (137-205)||(23915915-23915983)
[»] scaffold0223 (1 HSPs)
scaffold0223 (131-194)||(20139-20202)
[»] scaffold0053 (1 HSPs)
scaffold0053 (137-215)||(8744-8822)
[»] scaffold0014 (1 HSPs)
scaffold0014 (29-112)||(84334-84419)
[»] scaffold0021 (1 HSPs)
scaffold0021 (131-215)||(130428-130512)
[»] scaffold0007 (1 HSPs)
scaffold0007 (131-199)||(225297-225365)
[»] scaffold0018 (1 HSPs)
scaffold0018 (137-193)||(178854-178910)
[»] scaffold0652 (1 HSPs)
scaffold0652 (137-215)||(497-575)
[»] scaffold0116 (1 HSPs)
scaffold0116 (152-215)||(9844-9907)
[»] scaffold0103 (1 HSPs)
scaffold0103 (131-181)||(51791-51841)
[»] scaffold0475 (1 HSPs)
scaffold0475 (158-215)||(3262-3319)
[»] scaffold0306 (1 HSPs)
scaffold0306 (131-194)||(13367-13430)
[»] scaffold0152 (1 HSPs)
scaffold0152 (131-194)||(21897-21960)
[»] scaffold0066 (1 HSPs)
scaffold0066 (131-169)||(33392-33430)
[»] scaffold0019 (1 HSPs)
scaffold0019 (138-170)||(71714-71746)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 12464815 - 12464733
Alignment:
Q  30 actactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacaca 110  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12464815 actactacaaaatatagatttaacatcaagggggttttagttttcacatcagcacggaaaataactgaagagaaagatacaca 12464733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 29510339 - 29510417
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||    
T  29510339 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccatgtcagtatccgtgcttcat 29510417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 22652006 - 22651922
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||  |||| ||||| || ||||||    
T  22652006 tatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcagtgtccgtatccgtacttcat 22651922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 13436993 - 13437061
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtc 199  Q
    ||||| |||||||||||||| ||||||||||||||||||| | ||| |||| |||||||||||||||||    
T  13436993 tatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcatgtccggtgtccatgtc 13437061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 2572085 - 2572169
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| ||| ||||||| ||||||  |||||||||||||||| |||||| |||| |||||  ||||||||    
T  2572085 tatgtgattttttcaaattattaggtgtgtcgacgtgtcggtatccgtgtcgtgtccagtgtccgtgtccgtatccatgcttcat 2572169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 25192376 - 25192439
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||||| |||||||||||| ||||||||||||||||||| | ||||| ||||||||| |||||    
T  25192376 tatgtcactttttcaaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtcc 25192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 24858032 - 24857955
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||| || |||||||||||||||  | ||||||||||||||||||| | |||| ||||| || ||||||    
T  24858032 ttttttcaaattattaactgtgtcggcgtgtccatgtccgtgtcgtgtccggtgttcgtgtccgtatccgttcttcat 24857955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 926823 - 926901
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||| |||  |||| ||||||||| | ||||||||||||||||||||| |||  ||||| |||||||||    
T  926823 attttctcaaattattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtatccgtgcttcat 926901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 4673460 - 4673537
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||| || |||||||||||||||| | || |||||||||||| ||||| | || ||||| |||||||||    
T  4673460 attttttcaaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgtatccgtatc-gtgcttcat 4673537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 4298915 - 4298972
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||| |||||||||||||| || |||||||||||||| | |||| ||||||||||||    
T  4298915 tatgtgattttttcaaattattaactgtgtcggcgtgttagtatctgtgtcgtgtccg 4298972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 20873099 - 20873042
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||| |||||||||||||| || || ||||||||||||| | |||||||||||||||    
T  20873099 tatgtgattttttcaaattattatctatgtcggcgtgtcagtgtccgtgtcgtgtccg 20873042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 22197779 - 22197839
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtc 199  Q
    |||||||||||| ||||||||| ||||||| | | || |||||||||||||||||| ||||    
T  22197779 tttttcaaattattagctgtgttggcgtgttagtgtctgtgtcgtgtccggtgtccgtgtc 22197839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 44067546 - 44067462
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||| |||||||| || | |||||||||||||| | || |||| ||||| ||||||| |||| || || |||||||||    
T  44067546 tatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcggtgtggtgtctggtgtccgtgtctgtgtccgtgcttcat 44067462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 27213577 - 27213518
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggt 190  Q
    ||||| ||||| | |||||| |||| |||||||||||||  |||||||||||||||||||    
T  27213577 tatgtgattttctgaaattattagcagtgtcggcgtgtctgtatccgtgtcgtgtccggt 27213518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 28745520 - 28745471
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    |||||||||||| |||| ||||||  || |||||||||||||||||||||    
T  28745520 tttttcaaattattagcagtgtcgatgtatcattatccgtgtcgtgtccg 28745471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 43737885 - 43737926
Alignment:
Q  174 tccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||||||||||| |||| ||||| |||||||||    
T  43737885 tccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcat 43737926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 24362243 - 24362315
Alignment:
Q  143 tcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||| |||| |||||||||||||  | || ||||||| |||||||||| | || ||||| |||||||||    
T  24362243 tcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgtatccgtatctgtgcttcat 24362315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 36450789 - 36450833
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtc 181  Q
    |||||||||||||| ||| ||||||||||||||| | ||||||||    
T  36450789 attttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 36450833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 8777496 - 8777582
Alignment:
Q  29 cactactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    ||||||||||||||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8777496 cactactacaaaatatagatttaacatcaagggggttttagtttttacatcagcacggaaaataactgaagagaaagatacacactg 8777582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 23293015 - 23293099
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||||    
T  23293015 tatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatctgtgcttcat 23293099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 4876301 - 4876387
Alignment:
Q  29 cactactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    ||||||||||||||||| ||||||||||||| |  |||||||||||||||||||||| |||||| | ||||||||||||| ||||||    
T  4876301 cactactacaaaatatacatttaacatcaagcgggttttagttttcacatcagcacgaaaaatatcagaagagaaagatatacactg 4876387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 21527147 - 21527232
Alignment:
Q  29 cactactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacact 112  Q
    ||||||||||||||||| ||||||||||||| |  ||||||||||||||||||||||||||||| || ||  ||||||||||||||    
T  21527147 cactactacaaaatatacatttaacatcaagggggttttagttttcacatcagcacggaaaatatctaaatggaaagatacacact 21527232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 21945533 - 21945470
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    |||||||||||||||||||| ||||||||||||| ||||| | || ||||| ||||||||||||    
T  21945533 tatgtcattttttcaaattattagctgtgtcggcatgtcagtgtctgtgtcatgtccggtgtcc 21945470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 20633508 - 20633431
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||| |||| |||||| ||||||| | ||||| ||||||| ||||||| |||| ||||| |||||||||    
T  20633508 ttttttcaaattattagcggtgtcgacgtgtcagtgtccgtatcgtgtctggtgtccgtgtccgtatccgtgcttcat 20633431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 12895303 - 12895387
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| ||  ||||||||||||||||| | |||||||| |||||||||| | || ||||| ||| |||||    
T  12895303 tatgtgattttttcaaattattatttgtgtcggcgtgtcattgttcgtgtcgtatccggtgtccgtatccgtatctgtgtttcat 12895387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 847981 - 847898
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttca 214  Q
    ||||| ||||| |||||||| |||| |  ||||||||||| | || ||||||||||||| ||||||||| ||||| ||||||||    
T  847981 tatgtaattttctcaaattattagcggcatcggcgtgtcagtgtctgtgtcgtgtccggggtccatgtccgtatccgtgcttca 847898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 31189042 - 31189124
Alignment:
Q  28 acactactacaaaatatagatttaacatcaag-tgtttt-agttttcacatcagcacggaaaataactgaagagaaagataca 108  Q
    ||||||||| |||||||| ||||||||||| | |||||| | ||||||||||||  ||||||||| |||||| ||||||||||    
T  31189042 acactactagaaaatataaatttaacatcagggtgtttttaattttcacatcagtgcggaaaatacctgaagggaaagataca 31189124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 35158014 - 35158088
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatc 205  Q
    ||||| |||||| ||||||| ||| || |||||||||||| | ||||||| ||||||||||||| |||| |||||    
T  35158014 tatgtgatttttccaaattattagttgcgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtgtccgtatc 35158088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 49431048 - 49430998
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||||||||||| ||||||||||||||||||| | |||| ||||||||||    
T  49431048 ttttttcaaattattagctgtgtcggcgtgtcactgtccgagtcgtgtccg 49430998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 19482698 - 19482614
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| || ||||||||||| ||| ||||||||||||||| | || |||||||||| ||||||  |||  ||||| |||||||||    
T  19482698 tatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtctggtgtctgtgttcgtatccgtgcttcat 19482614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 24343537 - 24343453
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||| |||||||| || | |||||||||||||    ||||||||||||||||||||| |||| || || |||||||||    
T  24343537 tatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcat 24343453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 28084544 - 28084488
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||||||||||  |||||||||||||||||||   || ||||||||||||||||||    
T  28084544 ttttttcaaattcttagctgtgtcggcgtgtcagcgtctgtgtcgtgtccggtgtcc 28084488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 5414222 - 5414265
Alignment:
Q  152 tagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcca 195  Q
    ||||||||||||||||||  | ||||||||||||||||||||||    
T  5414222 tagctgtgtcggcgtgtccgtgtccgtgtcgtgtccggtgtcca 5414265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 20521878 - 20521945
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgt 198  Q
    ||||| ||||| |||||||| || | || ||||||||||| | ||||||||||||| |||||||||||    
T  20521878 tatgtgattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtcgtgtctggtgtccatgt 20521945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 30298969 - 30298926
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtc 181  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||    
T  30298969 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 30298926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 30327837 - 30327794
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtc 181  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||    
T  30327837 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 30327794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 31603045 - 31603112
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatc 205  Q
    ||||||||||||| |||  ||||  |||||||| ||| |||||||||| ||||||||||||| |||||    
T  31603045 ttttttcaaattattagtggtgtgagcgtgtcagtattcgtgtcgtgttcggtgtccatgtctgtatc 31603112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 28720898 - 28720849
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||||||||    
T  28720898 tttttcaaattattagctgtgtcggcatgtcagtgttcgtgtcgtgtccg 28720849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 17634 - 17719
Alignment:
Q  29 cactactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacact 112  Q
    ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17634 cactactacaaaatatagatttaacatcaagggggttttagttttcacatcagcacggaaaataactgaagggaaagatacacact 17719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 31780 - 31865
Alignment:
Q  29 cactactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacact 112  Q
    ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31780 cactactacaaaatatagatttaacatcaagggggttttagttttcacatcagcacggaaaataactgaagggaaagatacacact 31865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 37977 - 38062
Alignment:
Q  29 cactactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacact 112  Q
    ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37977 cactactacaaaatatagatttaacatcaagggggttttagttttcacatcagcacggaaaataactgaagggaaagatacacact 38062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 241624 - 241561
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||| ||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  241624 tatgtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcc 241561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 16428921 - 16429006
Alignment:
Q  29 cactactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacact 112  Q
    ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16428921 cactactacaaaatatagatttaacatcaagggggttttagttttcacatcagcacggaaaataactgaagggaaagatacacact 16429006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 25481932 - 25481848
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| ||||||||||||||||||||| ||| ||| ||||||| ||||| |||| ||||| |||||||||    
T  25481932 tatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccatgttgtgtccgatgtccgtgtctgtatccgtgcttcat 25481848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 11061105 - 11061189
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| |||||||||||| |||||| | |||||||||| |||| ||||| |||| ||||| |||||||||    
T  11061105 tatgtgattttttcaaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatccgatgtccgtgtccgtatccgtgcttcat 11061189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 24339672 - 24339609
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||    
T  24339672 tatgtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtcc 24339609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 24105702 - 24105651
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    |||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  24105702 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 24105651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 5409865 - 5409949
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| ||||||| || |||||||| | ||| |||||| |||||||||  |||| ||||| |||||||||    
T  5409865 tatgtgattttttcaaattattagctgtatcagcgtgtcagtgtccatgtcgtatccggtgtctgtgtctgtatccgtgcttcat 5409949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 1433483 - 1433400
Alignment:
Q  132 atgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||| ||||| |||||||| || | |||||||||||||| | |||||||||||| |||||||| || | ||||| |||||||||    
T  1433483 atgtgattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgtgcccgtatccgtgcttcat 1433400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 13770721 - 13770658
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| ||||||| |||||| ||||||||||||||| ||| | ||||||||||||||| |||||    
T  13770721 tatgtaatttttttaaattattagctgtgtcggcgtatcagtgtccgtgtcgtgtccgatgtcc 13770658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 27945071 - 27945008
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| ||||| |||||||| |||  |||||||||||||| | |||||||||||||||||||||    
T  27945071 tatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcc 27945008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 43027498 - 43027561
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||||||||||| |||||| |||| ||||||| | |||||||||||||| ||||||    
T  43027498 tatgtgattttttcaaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtccagtgtcc 43027561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 43250023 - 43249960
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||||||||| |||||||| || | |||||||||||||| | |||||||| ||||||||||||    
T  43250023 tatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtcc 43249960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 1885603 - 1885519
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||||||| |  || | ||||||  |||||  |||| |||||||||||||||||| |||| ||||| |||||||||    
T  1885603 tatgtcattttttcaaaattttatccgtgtcgatgtgtccgtatcagtgtcgtgtccggtgtccgtgtctgtatccgtgcttcat 1885519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 11722127 - 11722186
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggt 190  Q
    ||||| ||||| |||||||  |||| |||||||||||||| | |||||||||||||||||    
T  11722127 tatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggt 11722186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 9778504 - 9778454
Alignment:
Q  165 gtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||| | ||||||||||||||||||||| |||| ||||| |||||||||    
T  9778504 gtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcat 9778454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 26733334 - 26733272
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtc 193  Q
    ||||| ||||| |||||||| |||| |||||| ||||||| | ||||||||||||| ||||||    
T  26733334 tatgtgattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtctggtgtc 26733272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 17851461 - 17851377
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||| | |||||| |||| || |||  |||||  ||||| ||||||||||||||||| |||| ||||| |||||||||    
T  17851461 tatgtgattttctaaaattattagcggtatcgatgtgtcggtatccatgtcgtgtccggtgtccgtgtctgtatccgtgcttcat 17851377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 30731067 - 30730983
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||| |||||||| | || ||||||||||| || | |  |||||||||| ||||||| |||| ||||| |||||||||    
T  30731067 tatgtgattttctcaaattattcgcggtgtcggcgtgccactgtatgtgtcgtgtctggtgtccgtgtccgtatctgtgcttcat 30730983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 7693030 - 7692944
Alignment:
Q  29 cactactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    |||||||||||||||||||||||||  |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7693030 cactactacaaaatatagatttaacgacaagggggttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 7692944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 19793623 - 19793546
Alignment:
Q  38 aaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19793623 aaaatatagatttaacatcaagggggttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 19793546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 13806979 - 13806893
Alignment:
Q  29 cactactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    ||||||||||||||||||||||||||||||| |  |||||||||||||||||||| |||||||| || ||| |||||||||||||||    
T  13806979 cactactacaaaatatagatttaacatcaagggggttttagttttcacatcagcatggaaaatatctaaagggaaagatacacactg 13806893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 35672674 - 35672589
Alignment:
Q  29 cactactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacact 112  Q
    ||||||||||||||||| ||||||||||||| |  |||||||||||||||||||||| |||||| |||||| ||||||||||||||    
T  35672674 cactactacaaaatatacatttaacatcaagggggttttagttttcacatcagcacgaaaaatatctgaagggaaagatacacact 35672589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 27095634 - 27095549
Alignment:
Q  30 actactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||  ||||| || ||| |||||||||||||||    
T  27095634 actactacaaaatatagatttaacatcaagggggttttagttttcacatcagcacgagaaatatctaaagggaaagatacacactg 27095549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 38459504 - 38459419
Alignment:
Q  28 acactactacaaaatatagatttaacatcaa--gtgttttagttttcacatcagcacggaaaataactgaagagaaagatacacac 111  Q
    |||||||||||||||||||||||||||||||  | |||||| ||||||||||||||||||||||| |||| |  ||||||||||||    
T  38459504 acactactacaaaatatagatttaacatcaatggggttttaattttcacatcagcacggaaaatatctgatggaaaagatacacac 38459419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 19536434 - 19536490
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  19536434 ttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtcc 19536490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 8360127 - 8360041
Alignment:
Q  29 cactactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    ||||||||||||||||| ||||||||||| | |  |||||||||||||||||||||| |||||| ||||||  ||| ||||||||||    
T  8360127 cactactacaaaatatacatttaacatcatgggggttttagttttcacatcagcacgaaaaatatctgaaggaaaatatacacactg 8360041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 20539709 - 20539766
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    |||||||||||||| ||||||||||| ||||||| | |||||||||||||| ||||||    
T  20539709 attttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtcc 20539766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 27499666 - 27499621
Alignment:
Q  66 agttttcacatcagcacggaaaataactgaagagaaagatacacac 111  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||    
T  27499666 agttttcacatcagcacgaaaaatacctgatgagaaagatacacac 27499621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 21374728 - 21374807
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| ||||||||||||||||| | | ||     |||||||||||||| |||| ||||| |||||||||    
T  21374728 tatgtaattttttcaaattattagctgtgtcggcgtgttagtgtc-----cgtgtccggtgtccgtgtccgtatccgtgcttcat 21374807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 21616792 - 21616708
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||| |||||||| |||| |||||||||||||  | |||||||||||||  |||||  |||| ||||| |||||||||    
T  21616792 tatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtgtcatgtgtctgtgtccgtatccgtgcttcat 21616708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 21624289 - 21624233
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    |||||| |||||| ||||||||||||||||||| | || ||||||||| ||||||||    
T  21624289 ttttttaaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtcc 21624233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 24318319 - 24318382
Alignment:
Q  29 cactactacaaaatatagatttaacatcaa--gtgttttagttttcacatcagcacggaaaata 90  Q
    ||||||||||||||||| |||| ||||||   | ||||||||||||||||||||||| ||||||    
T  24318319 cactactacaaaatatacatttcacatcataggggttttagttttcacatcagcacgaaaaata 24318382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 28596481 - 28596445
Alignment:
Q  152 tagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||||||||||||||||||| |||||||||||||||    
T  28596481 tagctgtgtcggcgtgtcattgtccgtgtcgtgtccg 28596445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 30335447 - 30335363
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||||||||| ||| ||||||||||||  | | ||||||||||||| |   ||| |||| ||||| |||||||||    
T  30335447 tatgtcattttttcaaattattagttgtgtcggcgtgctagtgtccgtgtcgtgtctgagatccgtgtccgtatccgtgcttcat 30335363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 31284078 - 31283994
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||| |||||||| |||| |||||||||||| | | | |||||  |||||||||||| |||| ||||| |||||||||    
T  31284078 tatgtgattttctcaaattattagcagtgtcggcgtgtaagtgtacgtgttatgtccggtgtccgtgtccgtatctgtgcttcat 31283994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 34337205 - 34337289
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||||||||||||  | |||||||||||||||| | |||||||||| | |||| ||| |||| ||||| ||| |||||    
T  34337205 tatgtgattttttcaaattatcaactgtgtcggcgtgtcaatgtccgtgtcgtatacggtatccgtgtccgtatccgtgattcat 34337289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 38117188 - 38117245
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||||||||||| |||||||||||||||||||      ||||||||||||||||||    
T  38117188 tatgtgattttttcaaattattagctgtgtcggcgtgtca------gtgtcgtgtccggtgtcc 38117245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 29650949 - 29650899
Alignment:
Q  28 acactactacaaaatatagatttaacatcaa--gtgttttagttttcacat 76  Q
    |||||||||||||||||| ||||||||||||  | ||||||||||||||||    
T  29650949 acactactacaaaatatatatttaacatcaagggggttttagttttcacat 29650899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 18276545 - 18276467
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||| |||| |||||||| | ||| | || || ||||||||||||||| |||| ||||| |||||||||    
T  18276545 attttctcaaattattagcggtgtcggcatatcagtgtctgtatcgtgtccggtgtccgtgtctgtatccgtgcttcat 18276467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 37559007 - 37558957
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtc 181  Q
    ||||| |||||| ||||||| ||||||||||||||||||| | ||||||||    
T  37559007 tatgtgatttttacaaattattagctgtgtcggcgtgtcagtgtccgtgtc 37558957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 12668452 - 12668501
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgt 180  Q
    |||||||||||||||||||| ||| | ||||||||||||| |||| ||||    
T  12668452 tatgtcattttttcaaattattagttatgtcggcgtgtcagtatctgtgt 12668501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 17442092 - 17442055
Alignment:
Q  174 tccgtgtcgtgtccggtgtccatgtcagtatcagtgct 211  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  17442092 tccgtgtcgtatccggtgtccatgtctgtatcagtgct 17442055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 18841042 - 18841099
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||| |||||||||||||| ||| |||||| |||||||| | ||| |||||||||||    
T  18841042 tatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtccatgtcgtgtccg 18841099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 23058479 - 23058556
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||| ||  ||||| ||||||||| | ||||||||||||| ||| ||| |||| || || |||||||||    
T  23058479 ttttttcaaattattaattgtgtgggcgtgtcactgtccgtgtcgtgtcaggtatccgtgtccgtgtccgtgcttcat 23058556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 24894419 - 24894370
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgt 180  Q
    ||||| ||||||| |||||| ||||||||||||||||||| | |||||||    
T  24894419 tatgtgatttttttaaattattagctgtgtcggcgtgtcagtgtccgtgt 24894370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 30404879 - 30404936
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||| |||||||||||||| || | |||||||||||||| | |||||||| ||||||    
T  30404879 tatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgtcatgtccg 30404936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 6940277 - 6940233
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgt 183  Q
    ||||| |||||| ||||||||||||||||||| | ||||||||||    
T  6940277 tttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgt 6940233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 14996260 - 14996308
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtc 186  Q
    ||||||||||||| ||||||||||||| ||||| | |||||||| ||||    
T  14996260 ttttttcaaattattagctgtgtcggcttgtcagtgtccgtgtcatgtc 14996308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 15657894 - 15657834
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtg 191  Q
    ||||| |||||| ||||||| ||| || |||||||||| | | ||||||||||||||||||    
T  15657894 tatgtgatttttacaaattattagttgagtcggcgtgttagtgtccgtgtcgtgtccggtg 15657834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 15972897 - 15972841
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtc 193  Q
    |||||||||||||| ||  ||||||||||||||| | |||||||||| || ||||||    
T  15972897 attttttcaaattattaattgtgtcggcgtgtcagtgtccgtgtcgtatctggtgtc 15972841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 27460049 - 27460017
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtca 170  Q
    ||||||||||||| |||||||||||||||||||    
T  27460049 ttttttcaaattattagctgtgtcggcgtgtca 27460017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 696 - 609
Alignment:
Q  28 acactactacaaaatatagatttaacatcaa--gtgttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||| |||||| |||||| |||||||||||||||    
T  696 acactactacaaaatatacatttaacatcaaaggtgttttagttttcacatcagcacgaaaaatacctgaagggaaagatacacactg 609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 15382500 - 15382423
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||||    
T  15382500 ttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcat 15382423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 21522780 - 21522696
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||||| |||||| ||||||||||||||||||| | |||||||||||||||||| || |||| ||||| |||||||||    
T  21522780 tatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtgcttcat 21522696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 21533346 - 21533262
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||||| |||||| ||||||||||||||||||| | |||||||||||||||||| || |||| ||||| |||||||||    
T  21533346 tatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtgcttcat 21533262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 42469251 - 42469183
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtc 199  Q
    ||||||||||| |||||||| || | ||||||||||||||||||||||||||||| |||||||| ||||    
T  42469251 tatgtcattttctcaaattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtc 42469183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 22013444 - 22013381
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||| ||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  22013444 tatgtaatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcc 22013381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 21191085 - 21191147
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtc 193  Q
    ||||| |||||||||||||| ||||||||||||| ||||| | ||||||||||||||||||||    
T  21191085 tatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccggtgtc 21191147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 36642791 - 36642853
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtc 193  Q
    ||||||| |||||||||||| || |||||||||||||||| | ||||||||||||||||||||    
T  36642791 tatgtcactttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 36642853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 13287428 - 13287509
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgctt 212  Q
    ||||| |||||||||||||| || |||||||| ||||| | | ||||||||||||||||||||| |||| ||||| ||||||    
T  13287428 tatgtgattttttcaaattattatctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 13287509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 22299517 - 22299574
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccat 196  Q
    ||||| |||||| |||||||||||| |||||| |||||||||||| ||||||||||||    
T  22299517 ttttttaaattattagctgtgtcggtgtgtcaatatccgtgtcgtatccggtgtccat 22299574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 31084353 - 31084291
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtc 199  Q
    ||||| |||||||||||||| |||||||||||||||||||      |||||||||||||||||||||||    
T  31084353 tatgtgattttttcaaattattagctgtgtcggcgtgtca------gtgtcgtgtccggtgtccatgtc 31084291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 31132390 - 31132310
Alignment:
Q  32 tactacaaaatatagatttaacatcaa--gtgttttagttttcacatcagcacggaaaataactgaagagaaagatacaca 110  Q
    |||||||||||||| |||||||||||   | | |||| |||||||||| |||||||||||| |||||| ||||||||||||    
T  31132390 tactacaaaatatatatttaacatcagagggggtttatttttcacatcggcacggaaaatatctgaagggaaagatacaca 31132310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 19552572 - 19552632
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtg 191  Q
    ||||| |||||||||||||| || |||||||||||||||| | |||||||||||| |||||    
T  19552572 tatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgttcggtg 19552632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 24906330 - 24906390
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtg 191  Q
    |||||||||||||||||||| || |||||| ||||||||| | | ||||||||||||||||    
T  24906330 tatgtcattttttcaaattattatctgtgttggcgtgtcagtgttcgtgtcgtgtccggtg 24906390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 41995501 - 41995417
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||| ||||| ||| ||||||||||||||| | || ||||||| ||| |||||| |||| ||||| |||||||||    
T  41995501 tatgtgattttttcgaattattagttgtgtcggcgtgtcagtgtctgtgtcgtatccagtgtccgtgtccgtatccgtgcttcat 41995417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 6247652 - 6247589
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||||||||||| ||| ||||||||||||||| | | ||| |||||||||||||||    
T  6247652 tatgtgattttttcaaattattagatgtgtcggcgtgtcagtgtgcgtatcgtgtccggtgtcc 6247589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 14674299 - 14674249
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtc 181  Q
    ||||| |||||||||||||| ||||||||||||||||||| | ||||||||    
T  14674299 tatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 14674249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 19820429 - 19820486
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||||| |||| ||||||| |||||| | |||||||||||||||||||||    
T  19820429 attttctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtcc 19820486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 4105280 - 4105228
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggt 190  Q
    ||||||||||||| ||| | ||||||||||||| |||||||||| ||||||||    
T  4105280 ttttttcaaattattagttatgtcggcgtgtcagtatccgtgtcatgtccggt 4105228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 6326326 - 6326394
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtc 199  Q
    ||||| ||||| |||||||| ||||  ||||||||||||| | ||||||||||||||||| ||| ||||    
T  6326326 tatgtaattttctcaaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtc 6326394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 19579731 - 19579647
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||| |||||||| ||||||||||||||| ||| | ||||||| || |||||||||  |||  ||||| |||||||||    
T  19579731 tatgtgattttctcaaattattagctgtgtcggcgtatcagtgtccgtgttgtatccggtgtcggtgtacgtatccgtgcttcat 19579647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 6401503 - 6401444
Alignment:
Q  156 tgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||||  | ||||||||| ||||||||||| |||| ||||| |||||||||    
T  6401503 tgtgtcggcgtgtcggtgtccgtgtcgcgtccggtgtccgtgtctgtatccgtgcttcat 6401444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 8420057 - 8420011
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccg 177  Q
    ||||| |||||||||||||| ||||| ||||||||||||||| ||||    
T  8420057 tatgttattttttcaaattattagctatgtcggcgtgtcattgtccg 8420011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 15410491 - 15410561
Alignment:
Q  145 aaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||| |||| |||||||||||||| | ||||||||||||| | |||||| ||| ||||| ||| |||||    
T  15410491 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtctgatgtccacgtccgtatccgtgtttcat 15410561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 17177058 - 17177136
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||| ||||||||| ||||| ||| | |||| ||||| || ||||||  |||| ||||| |||||||||    
T  17177058 attttttcaaattattagctgtgttggcgtatcagtgtccgagtcgtatctggtgtctgtgtccgtatccgtgcttcat 17177136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 30135336 - 30135286
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||||||||||| ||| ||||||||||||||  |||| ||||||||||||    
T  30135336 ttttttcaaattattagttgtgtcggcgtgtcggtatctgtgtcgtgtccg 30135286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 41633757 - 41633708
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    |||||||||||| |||||||||||| |||||| |||| |||| |||||||    
T  41633757 tttttcaaattattagctgtgtcggagtgtcagtatctgtgtggtgtccg 41633708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 6183356 - 6183442
Alignment:
Q  29 cactactacaaaatatagatttaacatcaag--tgttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    ||||||||||||||||| ||||||||||||   |||||||||||||||||||||||| |||||| |||||| |||||||||||||||    
T  6183356 cactactacaaaatatacatttaacatcaaagctgttttagttttcacatcagcacgaaaaatacctgaagggaaagatacacactg 6183442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 21876146 - 21876060
Alignment:
Q  29 cactactacaaaatatagatttaacatcaagtgt--tttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    ||||||||||||||||| ||||||||||||| |   |||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  21876146 cactactacaaaatatacatttaacatcaaggggggtttagttttcacatcagcacggaaaatatctgaagggaaagatacacactg 21876060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 40917775 - 40917718
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  40917775 attttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtcc 40917718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 398794 - 398878
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||  ||| ||||| |||||||||    
T  398794 tatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgcgtccgtatccgtgcttcat 398878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 6612200 - 6612284
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| || |||| ||||||||||||| ||||||||||||||||||| | |||| ||||| |||||||||    
T  6612200 tatgtaattttttcaaattattaactgtatcggcgtgtcattgtccgtgtcgtgtccggtgttcgtgtccgtatctgtgcttcat 6612284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 1486738 - 1486822
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| |||||||||| |||||||| |||||||||||| |||||| ||| |||| |||||  ||||||||    
T  1486738 tatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccggtatccgtgtccgtatccatgcttcat 1486822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 10577785 - 10577848
Alignment:
Q  152 tagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||||||||  | ||||||||||||||||||||| |||| ||||| |||||||||    
T  10577785 tagctgtgtcggcgtgtcggtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcat 10577848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 48040499 - 48040554
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    |||||||||||| || |||||||||||||||| | |||||||||||||||||||||    
T  48040499 tttttcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcc 48040554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 13011252 - 13011329
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||| ||||||||||||| ||||| | | |||||||||| |||||||| |||| ||||| || ||||||    
T  13011252 ttttttcaaattattagctgtgtcggcatgtcagtgttcgtgtcgtgttcggtgtccgtgtctgtatctgttcttcat 13011329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 48450616 - 48450673
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||| |||||||||||||| ||||||||| ||||||||| | |||||||||||||||    
T  48450616 tatgttattttttcaaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccg 48450673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 7918240 - 7918324
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||| |||||||| |||   |||| |||||||||| || ||||||||||||||||||||||| ||| | |||||||||    
T  7918240 tatgtgattttctcaaattattagtgatgtcagcgtgtcattgtctgtgtcgtgtccggtgtccatgtctgtaaccgtgcttcat 7918324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 9709850 - 9709767
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttca 214  Q
    ||||| ||||| |||||||| |||| |||| ||| ||||| | ||||||||||||| | |||||||||| ||||| ||||||||    
T  9709850 tatgtgattttctcaaattattagcggtgtaggcatgtcagtgtccgtgtcgtgtctgatgtccatgtctgtatccgtgcttca 9709767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 48548016 - 48548075
Alignment:
Q  156 tgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||||||| ||||| | ||||||||||||| |||| ||||| |||||||||    
T  48548016 tgtgtcggcgtgtcattgtccgtattgtgtccggtgtccgtgtccgtatccgtgcttcat 48548075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 18190163 - 18190213
Alignment:
Q  165 gtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||| |||||||||||||||||||||||||||| |||||  ||||||||    
T  18190163 gtgtcagtatccgtgtcgtgtccggtgtccatgtccgtatccatgcttcat 18190213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 42359484 - 42359562
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||| ||| |||||| |||||||| | ||||||| |||| |||||| | |||| ||||| |||||||||    
T  42359484 attttttcaaattattagatgtgtcagcgtgtcagtgtccgtgttgtgtacggtgttcgtgtccgtatccgtgcttcat 42359562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 5927375 - 5927432
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    |||||||||||||| |||| ||||  |||||||| | |||||||||||||||||||||    
T  5927375 attttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtcc 5927432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 5944304 - 5944243
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtc 199  Q
    ||||||||||||| |||||||| |||||||||| | || |||||||||||| ||||| ||||    
T  5944304 ttttttcaaattattagctgtggcggcgtgtcagtgtctgtgtcgtgtccgatgtccttgtc 5944243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 18471321 - 18471244
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||| ||||||||||| || |||||| |||||||||| |||| | ||| ||||  |||| |||||||||    
T  18471321 ttttttcaaattattagctgtgtcgacgggtcattgtccgtgtcgtatccgatatccgtgtccatatctgtgcttcat 18471244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 2896150 - 2896234
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||| |||||||| |||| |||||||||||||| | ||||||| ||||||| ||||| || | ||||| || ||||||    
T  2896150 tatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtccgttgtccgtgactgtatccgttcttcat 2896234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 9103670 - 9103586
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| || |||||||||||||||| | |||| ||| |||| ||||| | ||||  |||| |||||||||    
T  9103670 tatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgagtcctgtcaggtgttcgtgtccatatccgtgcttcat 9103586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 46348418 - 46348462
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtc 181  Q
    |||||||||||||| ||||||||||||||||||| | ||||||||    
T  46348418 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 46348462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 113329 - 113290
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtca 170  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  113329 tatgtgattttttcaaattattagctgtgtcggcgtgtca 113290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 1262914 - 1262855
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggt 190  Q
    ||||| ||||| |||||||| ||||||||||||||||||  | | |||||||||||||||    
T  1262914 tatgtgattttctcaaattattagctgtgtcggcgtgtccgtgttcgtgtcgtgtccggt 1262855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 18556485 - 18556535
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtc 181  Q
    ||||| || ||||||||||| ||||||||||||||||||| | ||||||||    
T  18556485 tatgtgatattttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 18556535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 14359558 - 14359607
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    |||||||||||| ||||||||||||||||||  | || ||||||||||||    
T  14359558 tttttcaaattattagctgtgtcggcgtgtccgtgtctgtgtcgtgtccg 14359607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 12443489 - 12443537
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtg 179  Q
    ||||| ||||| |||||||| ||||||||||||||||||  ||||||||    
T  12443489 tatgtgattttctcaaattattagctgtgtcggcgtgtccgtatccgtg 12443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 15323193 - 15323125
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtc 199  Q
    ||||| |||||||||||||| || |||| ||| | ||||| | ||| ||||||||||||||||| ||||    
T  15323193 tatgtgattttttcaaattattaactgtatcgacatgtcagtgtccatgtcgtgtccggtgtccgtgtc 15323125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 21378608 - 21378552
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtcc 187  Q
    ||||| |||||||||| ||| |||||||||||| |||||  | ||||||||||||||    
T  21378608 tatgtaattttttcaatttattagctgtgtcggtgtgtccatgtccgtgtcgtgtcc 21378552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 34298466 - 34298382
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||| |||||||| |||  ||||||| |||||| | ||||||||||||| ||||| | |||| ||||| ||| |||||    
T  34298466 tatgtgattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtctggtgtacgtgtctgtatcggtgtttcat 34298382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 9107405 - 9107483
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||| |||||||||| |||||||||    
T  9107405 attttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgtccggtgtccgtgtcagtatccgtgcttcat 9107483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 24475333 - 24475416
Alignment:
Q  32 tactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    |||||| ||||||| ||||||||||||| |  |||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24475333 tactaccaaatatacatttaacatcaagggggttttagtttttacatcagcacggaaaatatctgaagagaaagatacacactg 24475416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 7938140 - 7938062
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||| |||| ||||| |||||||||    
T  7938140 attttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatccgtgcttcat 7938062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 16766727 - 16766643
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||| |||| |||||  ||||||||    
T  16766727 tatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatccatgcttcat 16766643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 34595164 - 34595101
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  34595164 tatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtcc 34595101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 8777008 - 8777086
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||| ||| ||||||||||||||| | ||||||||||||||| ||||| |||| ||||| |||||||||    
T  8777008 attttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgtatccgtgcttcat 8777086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 7977859 - 7977940
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgctt 212  Q
    ||||| |||||||||||||| ||||||||||||||||||| ||||| |||||||||| |||||| ||||  |||| ||||||    
T  7977859 tatgtaattttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgtgtccatatccgtgctt 7977940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 426543 - 426627
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| || |||||||||||||||| | ||||||||||||||||| ||| |||| |||||  ||||||||    
T  426543 tatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtctgtatccatgcttcat 426627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 853888 - 853951
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||    
T  853888 tatgtgattttttcaaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtcc 853951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 27966102 - 27966186
Alignment:
Q  29 cactactacaaaatatagatttaacatcaa--gtgttttagttttcacatcagcacggaaaataactgaagagaaagatacacact 112  Q
    ||||||||||||||||| || |||||||||  | ||||||||||||||||||||| |||||| | |||||| ||||||||||||||    
T  27966102 cactactacaaaatatacatataacatcaagggggttttagttttcacatcagca-ggaaaaaatctgaagggaaagatacacact 27966186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 12696354 - 12696297
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  12696354 tatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 12696297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 9027196 - 9027124
Alignment:
Q  143 tcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||| |||| |||||||||||||| | |||||||||||||||| |||| |||| ||||| |||||||||    
T  9027196 tcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgtgtccgtatcggtgcttcat 9027124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 10339155 - 10339239
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||| |||||||||| || |||||||||||||| | | | |||||||||| ||||||||||| ||||| |||||||||    
T  10339155 tatgtgattttctcaaattaatcgcggtgtcggcgtgtcagtgttcatgtcgtgtcctgtgtccatgtctgtatccgtgcttcat 10339239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 4118362 - 4118444
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttc 213  Q
    ||||| |||||||||||||| || || | ||| ||||| | ||| ||||||||||||||||||| |||| |||||||||||||    
T  4118362 tatgtgattttttcaaattattaactatatcgtcgtgttaatatacgtgtcgtgtccggtgtccgtgtccgtatcagtgcttc 4118444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 10294125 - 10294053
Alignment:
Q  143 tcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||| |||| || ||||| ||||| ||||||||||||||||||||| | |||| ||||| |||||||||    
T  10294125 tcaaattattagcggtatcggcatgtcagtatccgtgtcgtgtccggtgttcgtgtccgtatccgtgcttcat 10294053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 3398641 - 3398586
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    |||||||||||| ||||||||||||||||||| | |||||||||||| || |||||    
T  3398641 tttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtcc 3398586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 4877965 - 4877918
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgt 185  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||||    
T  4877965 ttttttcaaattattagctgtgtcggtgtgtcactatccgtgtcgtgt 4877918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 5000656 - 5000739
Alignment:
Q  132 atgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||| ||||| || ||||| |||| |||||| ||||||| |||||||||| |||||||||||| |||  ||||| |||||||||    
T  5000656 atgtgattttctcgaattattagcggtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgtgtatgtatctgtgcttcat 5000739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 8365548 - 8365611
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| || ||||||||||| ||| ||||||||||||||| | ||||||||||||| |||||||    
T  8365548 tatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtcc 8365611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 9629413 - 9629351
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtc 193  Q
    ||||| ||||| |||||||| | || |||||||||||||| |||||||||||||||| |||||    
T  9629413 tatgtgattttctcaaattattggcggtgtcggcgtgtcaatatccgtgtcgtgtccagtgtc 9629351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 17841618 - 17841668
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtc 181  Q
    ||||| |||||||||||||| ||||||||||||||||||| | ||||||||    
T  17841618 tatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 17841668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 3209404 - 3209332
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgct 211  Q
    ||||||||||||| ||||||||||||||||||  | | ||||||||||||||||||| |||  ||||| |||||    
T  3209404 ttttttcaaattattagctgtgtcggcgtgtctgtgt-cgtgtcgtgtccggtgtccgtgtttgtatccgtgct 3209332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 16833338 - 16833281
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||| |||||||||||||| ||| ||||||||||||||| | || ||||||||||||    
T  16833338 tatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtccg 16833281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 33001318 - 33001375
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||| |||||||||||||| |||| ||||||||||||||||  |||||| |||||||    
T  33001318 tatgtgattttttcaaattattagcagtgtcggcgtgtcattgaccgtgttgtgtccg 33001375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 18367845 - 18367783
Alignment:
Q  152 tagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||||||| |  ||| ||||||||||||||||| |||| ||||| |||||||||    
T  18367845 tagctgtgtcggcgtgtcgtg-tccatgtcgtgtccggtgtccgtgtccgtatccgtgcttcat 18367783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 1681782 - 1681704
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||| ||| ||||||||||||| | | |  ||||||||| |||||||  |||| ||||| |||||||||    
T  1681782 attttttcaaattattagttgtgtcggcgtgttagtgtatgtgtcgtgttcggtgtctgtgtctgtatccgtgcttcat 1681704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 5732539 - 5732613
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatc 205  Q
    ||||| ||||| |||||||| || | |||||||||||||| | ||| |||||||||| |||||| |||| |||||    
T  5732539 tatgtgattttctcaaattattaacggtgtcggcgtgtcagtgtccatgtcgtgtccagtgtccgtgtctgtatc 5732613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 6389769 - 6389711
Alignment:
Q  135 tcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtc 193  Q
    ||||||| |||||||| || | |||||||||||| | | ||||||||||||||||||||    
T  6389769 tcattttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtc 6389711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 10770703 - 10770760
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||| |||||||||||||| ||| ||||| ||||||||| | ||| |||||||||||    
T  10770703 tatgtgattttttcaaattattagttgtgttggcgtgtcagtgtccatgtcgtgtccg 10770760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 31959189 - 31959132
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||| |||||||||||||| |||||||| |||||||||| | | |||||| ||||||    
T  31959189 tatgtgattttttcaaattattagctgtgacggcgtgtcagtgttcgtgtcatgtccg 31959132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 2386742 - 2386814
Alignment:
Q  143 tcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||| ||||  |||||  |||||| | || |||||||||| | |||||||||||||||| |||||||||    
T  2386742 tcaaattagtagcattgtcgttgtgtcagtgtctgtgtcgtgtctgatgtccatgtcagtatccgtgcttcat 2386814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 46712 - 46628
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||| ||||| |||| ||||| |||||||||    
T  46712 tatgtgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccgatgtccgtgtccgtatccgtgcttcat 46628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 3164054 - 3164138
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| |||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||| |||| ||||| |||||||||    
T  3164054 tatgtgattttttcaaattattagctgtgtcgacgtgccattgtccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcat 3164138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 35994774 - 35994850
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||| |||||||||    
T  35994774 tttttcaaattattagctgtgtcggcttgtcattgtccatgtcgtgtccggtgtccatgtccgtatccgtgcttcat 35994850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 15796329 - 15796407
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||  |||| |||||||||    
T  15796329 attttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccatatccgtgcttcat 15796407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 7171524 - 7171448
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||  |||||||||||| ||||| ||||||||||||||||||||||  |||| ||||| |||||||||    
T  7171524 tttttcaaattacaagctgtgtcggcatgtcagtatccgtgtcgtgtccggtgtctgtgtccgtatccgtgcttcat 7171448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 10335323 - 10335399
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||| |||  ||||| |||||||||    
T  10335323 tttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtatccgtgcttcat 10335399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 24205070 - 24205154
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||| |||||||| || | |||||||||||||| | ||||||||||||||||||||| |||| || || |||||||||    
T  24205070 tatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcat 24205154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 9010696 - 9010614
Alignment:
Q  29 cactactacaaaatatagatttaacatcaag--tgttttagttttcacatcagcacggaaaataactgaagagaaagatacac 109  Q
    ||||||||||||||||| ||||||||| |||  ||||||||||||||||||| |||| ||||||  ||||| |||||||||||    
T  9010696 cactactacaaaatatacatttaacattaaggatgttttagttttcacatcaacacgaaaaatatttgaagggaaagatacac 9010614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 28918031 - 28917968
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||    
T  28918031 tatgtgattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtcc 28917968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 7424261 - 7424178
Alignment:
Q  32 tactacaaaatatagatttaacatca--agtgttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    |||||||||||||| || ||||||||  || ||||||||||||||||||||||| |||||| |||||   ||||||||||||||    
T  7424261 tactacaaaatatacatctaacatcacgagggttttagttttcacatcagcacgaaaaatatctgaaagaaaagatacacactg 7424178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 14829712 - 14829652
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtc 199  Q
    |||||||||||| ||||||||||||||||||| | || ||||| |||||||||||||||||    
T  14829712 tttttcaaattattagctgtgtcggcgtgtcagtgtctgtgtcatgtccggtgtccatgtc 14829652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 16000045 - 16000129
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||||| |||||| ||| ||||||||||||||| | || ||||||||| |||||||| |||| ||||| |||||||||    
T  16000045 tatgttatttttttaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtgtccgtatccgtgcttcat 16000129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 8587050 - 8587113
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||||||||||| ||| ||||||||||||||| | |||||||| ||||||||||||    
T  8587050 tatgtgattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtcc 8587113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 750647 - 750732
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcat-tatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| || ||||||||||| ||| ||||||| |||||||  | ||||||||||||||||||||| |||| ||||| |||||||||    
T  750647 tatgtgatattttcaaattattagttgtgtcgccgtgtcaagtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcat 750732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 14979211 - 14979154
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||| |||||||||||||| |||||||||||||||| |||| ||| |||||||||||    
T  14979211 tatgtgattttttcaaattattagctgtgtcggcgtgccattgtccttgtcgtgtccg 14979154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 39291481 - 39291564
Alignment:
Q  32 tactacaaaatatagatttaacatcaagtg--ttttagttttcacatcagcacggaaaataactgaagagaaagatacacactg 113  Q
    |||||||||||||| ||||||||||| | |  ||| |||||||||||||||||| |||||  ||||||  ||||||||||||||    
T  39291481 tactacaaaatatacatttaacatcacgggggtttcagttttcacatcagcacgaaaaatttctgaaggaaaagatacacactg 39291564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 21479142 - 21479070
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||| |||||||||||||||||||      |||||||||||||||||| |||| |||||  ||||||||    
T  21479142 attttttcaaattattagctgtgtcggcgtgtca------gtgtcgtgtccggtgtccgtgtccgtatccatgcttcat 21479070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 26492240 - 26492291
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    |||||||||||||| ||||| ||||||||||||| | |||||||||||||||    
T  26492240 attttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccg 26492291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 55401105 - 55401042
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||||||||||| ||| ||||||||||| ||| | |||||||||| ||||||||||    
T  55401105 tatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtcc 55401042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 8383281 - 8383219
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtc 199  Q
    ||||| |||||||| |||| |||||||||||||| | |||||||||||||| |||||| ||||    
T  8383281 attttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtgtc 8383219  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 14747584 - 14747513
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||| |||||||||||||||||||      |||||||||||||||||| | || ||||| |||||||||    
T  14747584 ttttttcaaattattagctgtgtcggcgtgtca------gtgtcgtgtccggtgtccgtatccgtatccgtgcttcat 14747513  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 25064939 - 25064877
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtc 193  Q
    ||||| |||||||||||| | |||| |||||||||||||| | || |||||||||||||||||    
T  25064939 tatgtgattttttcaaatcattagcggtgtcggcgtgtcaatgtctgtgtcgtgtccggtgtc 25064877  T

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Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 26508140 - 26508083
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccg 188  Q
    ||||| |||||||||||||| |||||||||| |||||||| |||| || |||||||||    
T  26508140 tatgtgattttttcaaattattagctgtgtcagcgtgtcagtatctgtatcgtgtccg 26508083  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 3865592 - 3865635
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtcattatccgtgtc 181  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||    
T  3865592 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 3865635  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 4987320 - 4987359
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtca 170  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  4987320 tatgtgattttttcaaattattagctgtgtcggcgtgtca 4987359  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 10318071 - 10318153
Alignment:
Q  139 tttttcaaattaatagctgtgtcggcgtgtca------ttatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||| |||||||||||||||||||       | ||||||||||||||||||||| |||  ||||| |||||||||    
T  10318071 tttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtgtcgtgtccggtgtccgtgttcgtatccgtgcttcat 10318153  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 40052362 - 40052323
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtca 170  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  40052362 tatgtgattttttcaaattattagctgtgtcggcgtgtca 40052323  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 41961688 - 41961742
Alignment:
Q  140 ttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||||||||| ||| |||| |||||||||| | || ||||||||||||||||||    
T  41961688 ttttcaaattattagttgtgacggcgtgtcagtgtctgtgtcgtgtccggtgtcc 41961742  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 3610663 - 3610602
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgt 192  Q
    ||||| ||||||| |||||| || |||||| ||||||||| | || ||||||||||||||||    
T  3610663 tatgttatttttttaaattattaactgtgttggcgtgtcagtgtctgtgtcgtgtccggtgt 3610602  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 4990996 - 4991069
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtat 204  Q
    ||||| ||||| ||||| || |||| ||||||| |||||| | |||||||||||| |||||||| |||| ||||    
T  4990996 tatgtaattttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgtgtccgtat 4991069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14028002 - 14027961
Alignment:
Q  174 tccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||||||||||| |||| ||||| |||||||||    
T  14028002 tccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcat 14027961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 16789679 - 16789744
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccat 196  Q
    ||||||||||| |||||||| || |||||||||| | ||  |||||||||| | ||||||||||||    
T  16789679 tatgtcattttctcaaattattatctgtgtcggcatctcggtatccgtgtcatctccggtgtccat 16789744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 10268515 - 10268567
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgt 183  Q
    ||||| |||||||||||||| || |||||||||||||||| | ||| ||||||    
T  10268515 tatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccatgtcgt 10268567  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 12674536 - 12674592
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtc 193  Q
    ||||| |||||||| |||| ||||||| |||||| | ||||||||||||| ||||||    
T  12674536 attttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtcgtgtctggtgtc 12674592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 14832129 - 14832081
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtg 179  Q
    ||||| |||||||||||||| ||||||| ||||||||||  ||||||||    
T  14832129 tatgtgattttttcaaattattagctgtatcggcgtgtccgtatccgtg 14832081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 23915983 - 23915915
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatc 205  Q
    |||||||||| ||  ||||||||| ||| ||||| | || |||||||||||||||||| |||| |||||    
T  23915983 attttttcaagttgttagctgtgttggcatgtcagtttctgtgtcgtgtccggtgtccgtgtccgtatc 23915915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 20202 - 20139
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  20202 tatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtcc 20139  T

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Target: scaffold0053 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 8822 - 8744
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| |||| |||||  ||||||||    
T  8822 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccatgcttcat 8744  T

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Target: scaffold0014 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 84334 - 84419
Alignment:
Q  29 cactactacaaaatatagatttaacatcaa--gtgttttagttttcacatcagcacggaaaataactgaagagaaagatacacact 112  Q
    |||||||| |||||||| |||||||||||   | |||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  84334 cactactataaaatatacatttaacatcataggggttttagttttcacatcagcacggaaaatatctgaagggaaagatacacact 84419  T

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Target: scaffold0021 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 130512 - 130428
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||||||||| || || |||||||||| ||||||| ||||||||||||||||||||| |||| |||||  ||||||||    
T  130512 tatgtgattttttcaaactattaactgtgtcggcttgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatccatgcttcat 130428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 225297 - 225365
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtc 199  Q
    ||||||||||| |||||||| || |||||||||||||||| | ||||||||||||||||||||| ||||    
T  225297 tatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtc 225365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 178854 - 178910
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtc 193  Q
    |||||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||    
T  178854 attttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 178910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 497 - 575
Alignment:
Q  137 attttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    |||||||||||||| |||| |||||||||| ||| | |||||| ||||| |||||||| |||| ||||| |||||||||    
T  497 attttttcaaattattagcagtgtcggcgtatcagtgtccgtggcgtgttcggtgtccgtgtccgtatccgtgcttcat 575  T

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Target: scaffold0116 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 9907 - 9844
Alignment:
Q  152 tagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||||||||||||||||  | ||| ||||||||||||||||| |||| ||||| |||||||||    
T  9907 tagctgtgtcggcgtgtcggtgtccatgtcgtgtccggtgtccgtgtccgtatccgtgcttcat 9844  T

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Target: scaffold0103 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 51841 - 51791
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtc 181  Q
    ||||| |||||||||||||| ||||||||||||||||||| | ||||||||    
T  51841 tatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 51791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 3319 - 3262
Alignment:
Q  158 tgtcggcgtgtcattatccgtgtcgtgtccggtgtccatgtcagtatcagtgcttcat 215  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||  |||| |||||||||    
T  3319 tgtcgacgtgtcagtatccgtgtcgtgtccggtgtccgtgtctatatccgtgcttcat 3262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 13430 - 13367
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| ||||| |||||||| ||| ||||||||||||||| | |||||||| | ||||||||||    
T  13430 tatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtcc 13367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 21897 - 21960
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtcattatccgtgtcgtgtccggtgtcc 194  Q
    ||||| ||||| |||||||| ||| ||||||||||||||| | |||||||| | ||||||||||    
T  21897 tatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtcc 21960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 33392 - 33430
Alignment:
Q  131 tatgtcattttttcaaattaatagctgtgtcggcgtgtc 169  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  33392 tatgttattttttcaaattattagctgtgtcggcgtgtc 33430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 71746 - 71714
Alignment:
Q  138 ttttttcaaattaatagctgtgtcggcgtgtca 170  Q
    ||||||||||||| |||||||||||||||||||    
T  71746 ttttttcaaattattagctgtgtcggcgtgtca 71714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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