View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10210_low_3 (Length: 539)
Name: NF10210_low_3
Description: NF10210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10210_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 24631647 - 24631998
Alignment:
| Q |
19 |
atcactagcactagcagatcttcaattgattacaacaaccaaataatttagttgattcctaatatttgcagtgtcggcggtaacatgcaactggaatctg |
118 |
Q |
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| T |
24631647 |
atcactagcactagcagatcttcaattgattacaacaaccgaataatttagttgattcgtaatatttgcagtgtcggcggtaacatgcaactggaatctg |
24631746 |
T |
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| Q |
119 |
tttctcatggaggagataacgcagcggaattaaaacattgtggtggcacattccggtgaaggtaacatgcagtgggatggcggcgaactgcatgtccttg |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24631747 |
tttctcatggcggagataacgcagcggaattaaaacattgtggtggcacattccggtgaaggtaacatgcagtgggacggcggcgaactgcatgtccttg |
24631846 |
T |
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| Q |
219 |
gaaacgtgcgtgtctataattttatttttgttnnnnnnnctaaatagtgtttattcaatctgagccattgatttttgatttaccacatggcgtacatcta |
318 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24631847 |
gaaacgtgcgtgtctataattttatttttgttaaaaaaactaaatagtgtttattcaatctgagccattgatttatgatttaccacatggcgtacatcta |
24631946 |
T |
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| Q |
319 |
agcaaagaatcgggaaagtggatgaaacattgactggagcagatccgaattc |
370 |
Q |
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| T |
24631947 |
agcaaagaatcgggaaagtggatgaaacattgactggagcagatccgaattc |
24631998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 363 - 524
Target Start/End: Original strand, 24632017 - 24632179
Alignment:
| Q |
363 |
ccgaattcatctttgtttacttgacagacagagaataaaaagttaaaa-gattgaaccaataatgaatgctgaaatgctactccaatcaaatccactgaa |
461 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24632017 |
ccgaattcatctttgtttactcgacagacagagaataaaaagttaaaaagattgaaccaataatgaatgctgaaatgctcctccaatcaaatccactgaa |
24632116 |
T |
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| Q |
462 |
cgtgtggtcaatttaccattacacccctcctcgtgttggacattcttcgtcaaacacccacag |
524 |
Q |
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| T |
24632117 |
cgtgtggtcaatttaccattacacccctcctcgtgttggacattcttcgtcaaacacccacag |
24632179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 52499106 - 52498755
Alignment:
| Q |
19 |
atcactagcactagcagatcttcaattgattacaacaaccaaataatttagttgattcctaatatttgcagtgtcggcggtaacatgcaactggaatctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52499106 |
atcactagcactagcagatcttcaattgattacaacaaccgaataatttagttgattcgtaatatttgcagtgtcggcggtaacatgcaactggaatctg |
52499007 |
T |
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| Q |
119 |
tttctcatggaggagataacgcagcggaattaaaacattgtggtggcacattccggtgaaggtaacatgcagtgggatggcggcgaactgcatgtccttg |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52499006 |
tttctcatggcggagataacgcagcggaattaaaacattgtggtggcacattccggtgaaggtaacatgcagtgggacggcggcgaactgcatgtccttg |
52498907 |
T |
|
| Q |
219 |
gaaacgtgcgtgtctataattttatttttgttnnnnnnnctaaatagtgtttattcaatctgagccattgatttttgatttaccacatggcgtacatcta |
318 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52498906 |
gaaacgtgcgtgtctataattttatttttgttaaaaaaactaaatagtgtttattcaatctgagccattgatttatgatttaccacatggcgtacatcta |
52498807 |
T |
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| Q |
319 |
agcaaagaatcgggaaagtggatgaaacattgactggagcagatccgaattc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52498806 |
agcaaagaatcgggaaagtggatgaaacattgactggagcagatccgaattc |
52498755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 363 - 524
Target Start/End: Complemental strand, 52498736 - 52498574
Alignment:
| Q |
363 |
ccgaattcatctttgtttacttgacagacagagaataaaaagttaaaa-gattgaaccaataatgaatgctgaaatgctactccaatcaaatccactgaa |
461 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52498736 |
ccgaattcatctttgtttactcgacagacagagaataaaaagttaaaaagattgaaccaataatgaatgctgaaatgctcctccaatcaaatccactgaa |
52498637 |
T |
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| Q |
462 |
cgtgtggtcaatttaccattacacccctcctcgtgttggacattcttcgtcaaacacccacag |
524 |
Q |
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| T |
52498636 |
cgtgtggtcaatttaccattacacccctcctcgtgttggacattcttcgtcaaacacccacag |
52498574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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