View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10210_low_5 (Length: 473)
Name: NF10210_low_5
Description: NF10210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10210_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Original strand, 26265742 - 26266119
Alignment:
| Q |
14 |
caaagggcaagcaaaagtacataggtgcactgcagaggttgagttctttggtaaagaacatccaacaatccctccaactacaaatgatgagagaatacac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26265742 |
caaagggcaagcaaaagtacataggtgcactgcagaggttgagttctttggtaaagaacatccaacaatccctccaactacaaatgatgagagaatacac |
26265841 |
T |
|
| Q |
114 |
caacttggaagacaagcatcaagtatgattgttggagaggagaacataaaattagcaccaacctacacagcaagtgaagattttgcattttacttggaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26265842 |
caacttggaagacaagcatcaagtatgattgttggagaagagaacataaaattagcaccaacctacacagcaagtgaagattttgcattttacttggaaa |
26265941 |
T |
|
| Q |
214 |
aagttcccggctcatttttcctcttaggtatacaaaatgagaaggttggatccatatattcagctcatagtcctcactattttattgatgaagatgttct |
313 |
Q |
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| T |
26265942 |
aagttcccggctcatttttcctcttaggtatacaaaatgagaaggttggatccatatattcagctcatagtcctcactattttattgatgaagatgttct |
26266041 |
T |
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| Q |
314 |
tcccattggtgctgcgatacatgcagcatttgctctttcatatcattcacattcaacaatttcttatctttagtaact |
391 |
Q |
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| T |
26266042 |
tccaattggtgctgcgatacatgcagcatttgctctttcatatcattcacattcaacaatttcttatctttagtaact |
26266119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 385
Target Start/End: Complemental strand, 31837329 - 31836959
Alignment:
| Q |
14 |
caaagggcaagcaaaagtacataggtgcactgcagaggttgagttctttggtaaagaacatccaacaatccctccaactacaaatgatgagagaatacac |
113 |
Q |
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| T |
31837329 |
caaagggcaagcagaagtgtatagatgctcagcagaggttga-ttctttggcgaggaacatccaacaattcctcctactacaaatgatgagagaatctac |
31837231 |
T |
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| Q |
114 |
caacttggaagacaagcatcaagtatgattgttggagaggagaacataaaattagcaccaacctacacagcaagtgaagattttgcattttacttggaaa |
213 |
Q |
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||||| | || ||| ||| ||||||||||||||||| ||||||||||||||| |||| | | ||||| |||||||||||||||||||||||||||| |
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| T |
31837230 |
caactagcgaggaaagtatctagtatgattgttggagaagagaacataaaattatcacccatcgtcacagggagtgaagattttgcattttacttggaaa |
31837131 |
T |
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| Q |
214 |
aagttcccggctcatttttcctcttaggtatacaaaatgagaaggttggatccatatattcagctcatagtcctcactattttattgatgaagatgttct |
313 |
Q |
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|||| || |||||||||||| | ||||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
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| T |
31837130 |
aagtgcctggctcatttttctttttaggtataaaaaatgaaaagagtggatccatatattcagctcatagtcctcaatttttcattgatgaagatgttct |
31837031 |
T |
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| Q |
314 |
tcccattggtgctgcgatacatgcagcatttgctctttcatatcattcacattcaacaatttcttatcttta |
385 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |
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| T |
31837030 |
tcccattggtgctgcaatacatgcagcatttgctctttcatattattcttattcaacaaattcttatcttta |
31836959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 389 - 461
Target Start/End: Original strand, 26266140 - 26266212
Alignment:
| Q |
389 |
acttatatgtgaacaattaataatatgagatgttagaggagaaattataatagaggcatgttaaatttgatga |
461 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26266140 |
acttatatgtgaacaattaataatatcagatgttagaggagaaattataatagaggcatgttaaatttgatga |
26266212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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