View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10210_low_6 (Length: 444)
Name: NF10210_low_6
Description: NF10210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10210_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 63 - 429
Target Start/End: Original strand, 41379432 - 41379789
Alignment:
| Q |
63 |
tacgcataagtcaataatcgaaccccacatcatatgcttaagtaatgtgagtcacttccccctcagaccacaccattttggcagtaaaatcatgtctaat |
162 |
Q |
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| T |
41379432 |
tacgcataagtcaatagtcgaaccccacatcatatgcttaagtaatgtgagtcacttccccctcagaccacatcattttggtagtaaaatcatgtctaat |
41379531 |
T |
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| Q |
163 |
gatatgccaaccattagcttagacacatcatatgcttttgttgttcaagaatccgatctcgaacacgccaaatccaacaagattaaacagaatttcgatc |
262 |
Q |
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| T |
41379532 |
gatatgctaaccattagcttagacacttcatatgtttttgttgttcaagaatctgatctcgaacacgccaaatccaacaagactaaacagaatttcgatc |
41379631 |
T |
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| Q |
263 |
ttaatttggattttggtctctctgatgacctcataggaatcgtgtcacactgcacttgataagaaataagacacagaaagacaaacagaagaagaatgga |
362 |
Q |
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| T |
41379632 |
ttaatttggatttcggtctctctgatgagctcacaggaatcgtgtcacgctgcacttgat--------agacacagaaagacaaacagaagaagaatgga |
41379723 |
T |
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| Q |
363 |
aagacgaattccggtgttgaaaaattacacgcctttagatttgtaactagcttcaggctctttctat |
429 |
Q |
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| T |
41379724 |
aagacgatttccggtgttgaaaaattacacgcctttagatttgtaactagcttc-ggctctttctat |
41379789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 41379373 - 41379410
Alignment:
| Q |
20 |
actctttcaaggatcttcagcgcatataacggttatgt |
57 |
Q |
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| T |
41379373 |
actctttcgaggatcttcagcgcatataacgattatgt |
41379410 |
T |
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