View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10210_low_8 (Length: 318)

Name: NF10210_low_8
Description: NF10210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10210_low_8
NF10210_low_8
[»] chr2 (1 HSPs)
chr2 (18-309)||(16352666-16352957)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 16352666 - 16352957
Alignment:
Q  18 acaaagactaattagccataaacttattcatatatgcatcaatagtcaattccatattaccaatttgctattgtatattcactaatattattaatatatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16352666 acaaagactaattagccataaacttattcatatatgcatcaatagtcaattccatattaccaatttgctattgtatattcactaatattattaatatatg 16352765  T
Q  118 catattgaactatataaaagtgctacactttgatccttctccatcaataacattcaaagaagtagcttcctgcaggatccactgagattcaacccttgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16352766 catattgaactatataaaagtgctacactttgatccttctccatcaataacattcaaagaagtagcttcctgcaggatccactgagattcaacccttgtc 16352865  T
Q  218 gcttagactggttttattcaaaaagcgaagatgggagggtgtttttcttcaagatcatcatgcacatcaaagaaaatccgtttggttcatct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16352866 gcttagactggttttattcaaaaagcgaagatgggagggtgtttttcttcaagatcatcatgcacatcaaagaaaatccgtttggttcatct 16352957  T

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