View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_high_11 (Length: 403)
Name: NF10211_high_11
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 46264288 - 46263910
Alignment:
| Q |
18 |
ctcaacaattcaggcaggttggcttgttttccctcaactacacgttactatcatttgcgggattgggacctttcactttcattacttcttgtaacttgtg |
117 |
Q |
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| T |
46264288 |
ctcaacaattcaggcaggttggcttgttttccctcaactacaagttactatcatttgcgggattgggacctttcactttcattacttcttgtaacttgtg |
46264189 |
T |
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| Q |
118 |
ttgtttaaattttgtagtgttattgttaaagcagataagaaacttttgactgtacagtttcccgatggtcatgagggacgggctttcacacttaaggtac |
217 |
Q |
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| T |
46264188 |
ttgtttaaattttgtagtgttattgttaaagcagataagaaacttttgactgtacagtttcccgatggtcatgagggacgggctttcacacttaaggtac |
46264089 |
T |
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| Q |
218 |
ttaaatcttcttttacatatcctatatttcaagagatgcctttctcataaagatgttagaattggtattatgtaaaattgtatttcagcccatattgttt |
317 |
Q |
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| T |
46264088 |
ttaaatcttcttttacatatcctatatttcaagagatgcctttctcataaagatgttagaattggtattatgtaaaattgtatttcagcccatattgttt |
46263989 |
T |
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| Q |
318 |
attcaatcctctaactctagtttctttatcttctttcccaagacctggattctctatctgcatgatataaatttcattg |
396 |
Q |
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| T |
46263988 |
attcaatcctctaactctagtttctttatcttctttcccaagacctggattctctatctgcatgatataaatttcattg |
46263910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 27774836 - 27774927
Alignment:
| Q |
124 |
aaattttgtagtgttattgttaaagcagataagaaacttttgactgtacagtttcccgatggtcatgagggacgggctttcacacttaaggt |
215 |
Q |
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| T |
27774836 |
aaattttgtagtgtttctatcaaagcagataagaaacttttgactgtacaatttcccaatgttcatgatggacgagtattaacacttaaggt |
27774927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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