View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10211_high_14 (Length: 348)

Name: NF10211_high_14
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10211_high_14
NF10211_high_14
[»] chr7 (2 HSPs)
chr7 (17-339)||(25935174-25935483)
chr7 (77-121)||(27571894-27571938)
[»] chr6 (2 HSPs)
chr6 (77-121)||(34027426-34027470)
chr6 (104-142)||(25196014-25196052)
[»] chr2 (3 HSPs)
chr2 (58-121)||(4894147-4894210)
chr2 (77-116)||(37420204-37420243)
chr2 (80-121)||(33961993-33962034)
[»] scaffold0361 (1 HSPs)
scaffold0361 (77-120)||(14123-14166)
[»] chr5 (3 HSPs)
chr5 (86-121)||(24306114-24306149)
chr5 (86-121)||(24367167-24367202)
chr5 (113-142)||(38592191-38592220)
[»] chr1 (4 HSPs)
chr1 (86-121)||(10324956-10324991)
chr1 (78-121)||(17284128-17284171)
chr1 (77-116)||(24587949-24587988)
chr1 (77-119)||(7790651-7790693)
[»] chr4 (3 HSPs)
chr4 (80-121)||(26911417-26911458)
chr4 (77-118)||(37439180-37439221)
chr4 (77-121)||(4243419-4243463)
[»] chr8 (2 HSPs)
chr8 (77-121)||(26100155-26100199)
chr8 (80-120)||(35495293-35495333)
[»] chr3 (1 HSPs)
chr3 (77-117)||(35253476-35253516)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 25935174 - 25935483
Alignment:
Q  17 aaaagtgagttgtaggttaagtgacttatatttggatacatgatacattcattcagaagcgagttgaataataaattagagtgtaaaaatcaattataga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||         
T  25935174 aaaagtgagttgtaggttaagtgacttatatttggatacatgatacattcattcggaagcgagttgaataataaattagagtgtaaaaatcaatt----- 25935268  T
Q  117 atcaattctacttgagagcaaccaaatataaatgccaaaatcaatttcacatctctagaattgattttagcgctttcaaaaataaaaccaaatacacact 216  Q
           |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  25935269 -------ctacttgagagcaaccaa-tataattgtcaaaatcaatttcacatctctagaattgattttagcgctttcaaaaatgaaaccaaacacacact 25935360  T
Q  217 cgggatgcataataatttatggatgagtgcttgttaaagacctatttgaattgactaatttcatacttatctattgattgtgaaaccctttgccaaacct 316  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  25935361 cgggattcataataatttatggatgagtgcttgttaaagacctatttgaattgactaattttatacttatctattgactgtgaaaccctttgccaaacct 25935460  T
Q  317 cgtgaaaactcttttattcttct 339  Q
    |||||||||||||||||||||||    
T  25935461 cgtgaaaactcttttattcttct 25935483  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 27571938 - 27571894
Alignment:
Q  77 gagttgaataataaattagagtgtaaaaatcaattatagaatcaa 121  Q
    ||||||||||||||| | |||||| |||||||||| |||||||||    
T  27571938 gagttgaataataaacttgagtgttaaaatcaattctagaatcaa 27571894  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 34027426 - 34027470
Alignment:
Q  77 gagttgaataataaattagagtgtaaaaatcaattatagaatcaa 121  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||    
T  34027426 gagttgaataataaatttgagtgtaaaaatcaattctagaatcaa 34027470  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 25196014 - 25196052
Alignment:
Q  104 aatcaattatagaatcaattctacttgagagcaaccaaa 142  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  25196014 aatcaatactagaatcaattctacttgagagcaaccaaa 25196052  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 4894147 - 4894210
Alignment:
Q  58 gatacattcattcagaagcgagttgaataataaattagagtgtaaaaatcaattatagaatcaa 121  Q
    |||||||||||| | ||| || |||||||||||||| |||| ||| ||||||||||||||||||    
T  4894147 gatacattcatttaaaagtgacttgaataataaatttgagtataataatcaattatagaatcaa 4894210  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 37420204 - 37420243
Alignment:
Q  77 gagttgaataataaattagagtgtaaaaatcaattataga 116  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  37420204 gagttgaataataaatttgagtgtaaaaatcaattctaga 37420243  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 33961993 - 33962034
Alignment:
Q  80 ttgaataataaattagagtgtaaaaatcaattatagaatcaa 121  Q
    ||||| |||||||| |||| ||||||||||||||||||||||    
T  33961993 ttgaacaataaatttgagtctaaaaatcaattatagaatcaa 33962034  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 14123 - 14166
Alignment:
Q  77 gagttgaataataaattagagtgtaaaaatcaattatagaatca 120  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||    
T  14123 gagttgaaaaataaatttgagtgtaaaaatcaattctagaatca 14166  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 24306114 - 24306149
Alignment:
Q  86 aataaattagagtgtaaaaatcaattatagaatcaa 121  Q
    |||||||| |||||||||||||||||||||||||||    
T  24306114 aataaatttgagtgtaaaaatcaattatagaatcaa 24306149  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 24367202 - 24367167
Alignment:
Q  86 aataaattagagtgtaaaaatcaattatagaatcaa 121  Q
    |||||||| |||||||||||||||||||||||||||    
T  24367202 aataaatttgagtgtaaaaatcaattatagaatcaa 24367167  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 142
Target Start/End: Complemental strand, 38592220 - 38592191
Alignment:
Q  113 tagaatcaattctacttgagagcaaccaaa 142  Q
    ||||||||||||||||||||||||||||||    
T  38592220 tagaatcaattctacttgagagcaaccaaa 38592191  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 10324956 - 10324991
Alignment:
Q  86 aataaattagagtgtaaaaatcaattatagaatcaa 121  Q
    |||||||| |||||||||||||||||||||||||||    
T  10324956 aataaatttgagtgtaaaaatcaattatagaatcaa 10324991  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 17284171 - 17284128
Alignment:
Q  78 agttgaataataaattagagtgtaaaaatcaattatagaatcaa 121  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||    
T  17284171 agttgaacaataaatttgagtgtaaaaatcaattttagaatcaa 17284128  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 24587988 - 24587949
Alignment:
Q  77 gagttgaataataaattagagtgtaaaaatcaattataga 116  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  24587988 gagttgaataataaatttgagtgttaaaatcaattataga 24587949  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 7790651 - 7790693
Alignment:
Q  77 gagttgaataataaattagagtgtaaaaatcaattatagaatc 119  Q
    |||||||| |||||||| | |||||||||||||||||||||||    
T  7790651 gagttgaacaataaatttgtgtgtaaaaatcaattatagaatc 7790693  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 26911417 - 26911458
Alignment:
Q  80 ttgaataataaattagagtgtaaaaatcaattatagaatcaa 121  Q
    |||||||||||||| || ||||||||||||||||| ||||||    
T  26911417 ttgaataataaatttgaatgtaaaaatcaattatataatcaa 26911458  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 37439221 - 37439180
Alignment:
Q  77 gagttgaataataaattagagtgtaaaaatcaattatagaat 118  Q
    |||||||| |||||| | ||||||||||||||||||||||||    
T  37439221 gagttgaacaataaaattgagtgtaaaaatcaattatagaat 37439180  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 4243463 - 4243419
Alignment:
Q  77 gagttgaataataaattagagtgtaaaaatcaattatagaatcaa 121  Q
    |||| ||| |||||||| ||||||||||||||||| |||||||||    
T  4243463 gagtagaacaataaatttgagtgtaaaaatcaattctagaatcaa 4243419  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 26100155 - 26100199
Alignment:
Q  77 gagttgaataataaattagagtgtaaaaatcaattatagaatcaa 121  Q
    ||||||||  ||||||| | |||||||||||||||||||||||||    
T  26100155 gagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaa 26100199  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 35495333 - 35495293
Alignment:
Q  80 ttgaataataaattagagtgtaaaaatcaattatagaatca 120  Q
    ||||| |||||||| |||| |||||||||||||||||||||    
T  35495333 ttgaacaataaatttgagtataaaaatcaattatagaatca 35495293  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 35253476 - 35253516
Alignment:
Q  77 gagttgaataataaattagagtgtaaaaatcaattatagaa 117  Q
    ||||||||| ||||||| ||||||||||||||||| |||||    
T  35253476 gagttgaatgataaatttgagtgtaaaaatcaattctagaa 35253516  T

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