View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_high_16 (Length: 344)
Name: NF10211_high_16
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 25 - 292
Target Start/End: Complemental strand, 48586577 - 48586309
Alignment:
| Q |
25 |
gctaatttattttagagcatggtcgaagttcagactataaatgctactgctgatcacaagtaagggctattaatactt-ttaaatgcagtatatcatttt |
123 |
Q |
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| T |
48586577 |
gctaatttattttagagcatggtcgaagttcagactataaatgctactgctgatcacaagtaagggctattaatactaattaaatgcaggatatcatttt |
48586478 |
T |
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| Q |
124 |
cagactataaatgctactgccgatcacaagtgctgttaggggctatttaacgtgacccttattacaatatcaaatgtagaaatcagagtattaaactagt |
223 |
Q |
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| T |
48586477 |
cagactataaatgctactgccgatcacaagtgctgttaggggctatttaacgtgacccttattacaatatcaaatgtagaaatcagagtattaaactagt |
48586378 |
T |
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| Q |
224 |
gtaaatttatttttcaaaaaattgaaaataannnnnnnnnncaatagatatttaacgtgacccttatta |
292 |
Q |
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| T |
48586377 |
gtaaatttatttttcaataaattgaaaataattttttttttcaatagatatttaacgtgacccttatta |
48586309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 48586265 - 48586214
Alignment:
| Q |
287 |
ttattattttctcttaactcctacggactaccacactttctagctaccagat |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48586265 |
ttattattttctcttaactcctacggactaccacactttctagctaccagat |
48586214 |
T |
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