View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10211_high_17 (Length: 335)
Name: NF10211_high_17
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_high_17 |
 | |
|
| [»] scaffold0071 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 27498844 - 27499144
Alignment:
| Q |
20 |
ttgttgacctccaagttgctcaagttctcaaaactacacaaatttaatatatcatcgaccatgcccttggattcttcttcattagagaatggacagctca |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | || |
|
|
| T |
27498844 |
ttgttgacctccaagttgcttaagttctcaaaactacacaaatttaatatatcatcgatcatgcccttggattcttcttcattaaagaatggacaaccca |
27498943 |
T |
|
| Q |
120 |
gaaattcagcaatctttttcaaataaaaactaggtttcattttcatttcttcatatttcaaaaacatcaccttctctggcctttccaagctttccttcca |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27498944 |
gaaactcagcaatctttttcaaataaaaactaggtttcattttcatttcttcaaattttataaacatcaccttctctggcctttccaagttttccttcca |
27499043 |
T |
|
| Q |
220 |
atatcctattacatgctcccaaaagggtccataagaactcactcctctacaaaaactctcaaaagcctcttctaatggaagtgctcctctactctgtgct |
319 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27499044 |
atatcctaatacatgctcccaaaagggtccataagaactcactcctctacaaaaactctcaaaagcctcttctaatggaagtggtcctctactctgtgct |
27499143 |
T |
|
| Q |
320 |
c |
320 |
Q |
| |
|
| |
|
|
| T |
27499144 |
c |
27499144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 23 - 320
Target Start/End: Complemental strand, 27544521 - 27544224
Alignment:
| Q |
23 |
ttgacctccaagttgctcaagttctcaaaactacacaaatttaatatatcatcgaccatgcccttggattcttcttcattagagaatggacagctcagaa |
122 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||| || |||||||||||||| || ||||||||||| | || || |
|
|
| T |
27544521 |
ttgacctccaagttgctcagtttctcaaaactacatagatttaatatatcatcaaccatacctttggattcttcttctttggagaatggacaacccaaaa |
27544422 |
T |
|
| Q |
123 |
attcagcaatctttttcaaataaaaactaggtttcattttcatttcttcatatttcaaaaacatcaccttctctggcctttccaagctttccttccaata |
222 |
Q |
| |
|
| | |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27544421 |
aattagcaatctctttcaaataaaaactaggattcattttcatttcttcatatttcaaaaacatcaccttctccggcctttccaagctttccttccaata |
27544322 |
T |
|
| Q |
223 |
tcctattacatgctcccaaaagggtccataagaactcactcctctacaaaaactctcaaaagcctcttctaatggaagtgctcctctactctgtgctc |
320 |
Q |
| |
|
||| | ||||||||||||||| |||||| |||||||| | ||||||||||||||||| ||||| |||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
27544321 |
tcccaatacatgctcccaaaacggtccaaaagaactcgcgcctctacaaaaactctcgaaagcttcttgtaatggaagtggtcctctactttgtgctc |
27544224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 23 - 312
Target Start/End: Complemental strand, 27505068 - 27504779
Alignment:
| Q |
23 |
ttgacctccaagttgctcaagttctcaaaactacacaaatttaatatatcatcgaccatgcccttggattcttcttcattagagaatggacagctcagaa |
122 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||||||||| |||||||||||| |||| || |||||||||||||| | ||||||||||| | || || |
|
|
| T |
27505068 |
ttgatctccaagttgctaagcttctcaaaactacacaaatgtaatatatcatcaaccacaccattggattcttcttcttcggagaatggacaccccaaaa |
27504969 |
T |
|
| Q |
123 |
attcagcaatctttttcaaataaaaactaggtttcattttcatttcttcatatttcaaaaacatcaccttctctggcctttccaagctttccttccaata |
222 |
Q |
| |
|
| | |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || |
|
|
| T |
27504968 |
acttagcaatctctttcaaaacaaaattaggtttcattttcatttcttcatatttcaaaaacataaccttctccggtctttccaagctttccttccagta |
27504869 |
T |
|
| Q |
223 |
tcctattacatgctcccaaaagggtccataagaactcactcctctacaaaaactctcaaaagcctcttctaatggaagtgctcctctact |
312 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27504868 |
tcctaatacatgatcccaaaacggtccataagaagttgttcctctacaaaaactctcaaaagcctcttctaatggaagtgttcctctact |
27504779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 27496596 - 27496810
Alignment:
| Q |
29 |
tccaagttgctcaagttctcaaaactacacaaatttaatatatcatcgaccatgcccttggattcttcttcattagagaatggacagctcagaaattcag |
128 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| |||| ||| ||| | || ||| |||| |
|
|
| T |
27496596 |
tccaagttgcccagattctcaaaactacacaaatttaataaatcatcaaccatgccgttggattcttcttcaatagaaaatccacaacccaaaaactcag |
27496695 |
T |
|
| Q |
129 |
caatctttttcaaataaaaactaggtttcattttcatttcttcatatttcaaaaacatcaccttctctggcctttccaagctttccttccaatatcctat |
228 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| | |||||||||| |
|
|
| T |
27496696 |
caatctttttcaaataaaaactaggcttcattttcgcttcttcatatttcaaaaacatcaccttctctggcatttccaaactttccgttcaatatcctaa |
27496795 |
T |
|
| Q |
229 |
tacatgctcccaaaa |
243 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27496796 |
tacatgctcccaaaa |
27496810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 320
Target Start/End: Original strand, 11317298 - 11317595
Alignment:
| Q |
23 |
ttgacctccaagttgctcaagttctcaaaactacacaaatttaatatatcatcgaccatgcccttggattcttcttcattagagaatggacagctcagaa |
122 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| || ||| |||||||||| || ||||||||||| || || |
|
|
| T |
11317298 |
ttgacctccaaattgctcaacttctcaaaactacacaaatttaatatatcatcaaccacacctttgaattcttcttctttggagaatggacactccaaaa |
11317397 |
T |
|
| Q |
123 |
attcagcaatctttttcaaataaaaactaggtttcattttcatttcttcatatttcaaaaacatcaccttctctggcctttccaagctttccttccaata |
222 |
Q |
| |
|
| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11317398 |
actcagcaagctctttcaaataaaaattaggtttcattttcatttcttcatatttcaaaaacatcaccttctctggcctttccaagcttttcttccaata |
11317497 |
T |
|
| Q |
223 |
tcctattacatgctcccaaaagggtccataagaactcactcctctacaaaaactctcaaaagcctcttctaatggaagtgctcctctactctgtgctc |
320 |
Q |
| |
|
| | | |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||||||| ||||||| |
|
|
| T |
11317498 |
taccaatacatgctcccaaaagggtccaaaagaactcactcctctacaaaaattctcaaaagcctcttgtagtggaagtgttcctctactttgtgctc |
11317595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 26 - 293
Target Start/End: Complemental strand, 15461382 - 15461115
Alignment:
| Q |
26 |
acctccaagttgctcaagttctcaaaactacacaaatttaatatatcatcgaccatgcccttggattcttcttcattagagaatggacagctcagaaatt |
125 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| || || ||||||||||| || ||||||||||| | || ||| | |
|
|
| T |
15461382 |
acctccaagttgctcagcttctcaaaactacacaaatttaatatatcatcaaccactcctttagattcttcttctttggagaatggacaccccaaaaact |
15461283 |
T |
|
| Q |
126 |
cagcaatctttttcaaataaaaactaggtttcattttcatttcttcatatttcaaaaacatcaccttctctggcctttccaagctttccttccaatatcc |
225 |
Q |
| |
|
|||||| || |||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
15461282 |
cagcaacctctttcaaataaaaacaaggcttcattttcatttcttcatatctcaaaaacatcaccttctcttgcctttccaagctttctttccagtatcc |
15461183 |
T |
|
| Q |
226 |
tattacatgctcccaaaagggtccataagaactcactcctctacaaaaactctcaaaagcctcttcta |
293 |
Q |
| |
|
|| || ||| ||||||||||||||| | ||||||| |||||| |||| ||||||| | |||||||| |
|
|
| T |
15461182 |
taataaatgttcccaaaagggtccaaacaaactcacacctctagaaaatttctcaaatgactcttcta |
15461115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 317
Target Start/End: Original strand, 11438882 - 11439173
Alignment:
| Q |
26 |
acctccaagttgctcaagttctcaaaactacacaaatttaatatatcatcgaccatgcccttggattcttcttcattagagaatggacagctcagaaatt |
125 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||| |||| || || |||||||| || |||| ||| ||||| || ||||| |
|
|
| T |
11438882 |
acctccaagttgctaagcttctcaaaactacacaaatttaatatatcatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaatt |
11438981 |
T |
|
| Q |
126 |
cagcaatctttttcaaataaaaactaggtttcattttcatttcttcatatttcaaaaacatcaccttctctggcctttccaagctttccttccaatatcc |
225 |
Q |
| |
|
|||||| ||||||||||| |||| ||| |||||||||||||||||| || |||||||||| ||||| | || |||||||| |||||||||||||| || |
|
|
| T |
11438982 |
cagcaagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaaaacataaccttgtttgatctttccaaactttccttccaataacc |
11439081 |
T |
|
| Q |
226 |
tattacatgctcccaaaagggtccataagaactcactcctctacaaaaactctcaaaagcctcttctaatggaagtgctcctctactctgtg |
317 |
Q |
| |
|
|| |||||||||||||||||||||| | || ||||||||||| ||| | | ||||| ||||||||||||||||| ||| ||||| |||| |
|
|
| T |
11439082 |
taatacatgctcccaaaagggtccaaacaaagtcactcctctagtaaagttatgaaaagactcttctaatggaagtgttccactactttgtg |
11439173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 26 - 293
Target Start/End: Original strand, 810 - 1077
Alignment:
| Q |
26 |
acctccaagttgctcaagttctcaaaactacacaaatttaatatatcatcgaccatgcccttggattcttcttcattagagaatggacagctcagaaatt |
125 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| || || ||||||||||| || ||||||||||| | || ||| | |
|
|
| T |
810 |
acctccaagttgctcagcttctcaaaactacacaaatttaatatatcatcaaccactcctttagattcttcttctttggagaatggacaccccaaaaact |
909 |
T |
|
| Q |
126 |
cagcaatctttttcaaataaaaactaggtttcattttcatttcttcatatttcaaaaacatcaccttctctggcctttccaagctttccttccaatatcc |
225 |
Q |
| |
|
|||||| || |||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
910 |
cagcaacctctttcaaataaaaacaaggcttcattttcatttcttcatatctcaaaaacatcaccttctcttgcctttccaagctttctttccagtatcc |
1009 |
T |
|
| Q |
226 |
tattacatgctcccaaaagggtccataagaactcactcctctacaaaaactctcaaaagcctcttcta |
293 |
Q |
| |
|
|| || ||| ||||||||||||||| | ||||||| |||||| |||| ||||||| | |||||||| |
|
|
| T |
1010 |
taataaatgttcccaaaagggtccaaacaaactcacacctctagaaaatttctcaaatgactcttcta |
1077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University