View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_high_22 (Length: 276)
Name: NF10211_high_22
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 61 - 264
Target Start/End: Complemental strand, 28935787 - 28935584
Alignment:
| Q |
61 |
tcataccattcacttgaaaaagaaaactctcagttcttcacaaaaaccaaaacaatggctgcaaatttttatttacctgacgactgttggcgatctgtct |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28935787 |
tcataccattcacttgaaaaagaaaactctcagttcttcacaaaaaccaaaacaatggctgcaaatttttatttacctgacgactgttggcgaactgtct |
28935688 |
T |
|
| Q |
161 |
tcacattcctcataaaaaacgacgaagacgacaaggagaacagtcagaccttcaagtctctctctcgagtctcgaaacagttcctctctatcactaacag |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28935687 |
tcacattcctcataaaaaacgacgaagacgacaaggagaacagtcagaccttcaagtctctctctcgagtctcgaaacagttcctctctatcaccaacag |
28935588 |
T |
|
| Q |
261 |
tctc |
264 |
Q |
| |
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|||| |
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|
| T |
28935587 |
tctc |
28935584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 28660951 - 28661004
Alignment:
| Q |
211 |
ttcaagtctctctctcgagtctcgaaacagttcctctctatcactaacagtctc |
264 |
Q |
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|||||||||||||| | |||||||| ||||||||||||||||| ||| ||||| |
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| T |
28660951 |
ttcaagtctctctcccttgtctcgaagcagttcctctctatcaccaacggtctc |
28661004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 5102082 - 5102134
Alignment:
| Q |
211 |
ttcaagtctctctctcgagtctcgaaacagttcctctctatcactaacagtct |
263 |
Q |
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||||||||||||||| | |||||||||||||| | ||||||||||| ||||| |
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| T |
5102082 |
ttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatagtct |
5102134 |
T |
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