View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_high_27 (Length: 247)
Name: NF10211_high_27
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 9213644 - 9213859
Alignment:
| Q |
19 |
attacaccgttagttgtcggaatacaaatcaatgtttcaattccatgcacgtgtgcttcattggatctttcacagttatagatttgaagttcatgtttac |
118 |
Q |
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| T |
9213644 |
attacaccgttagttgtcggaatacaaatcaatgtttcaattccatgcacgtgtgcttcattggatctttcacagttatagatttgcagttcatgtttac |
9213743 |
T |
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| Q |
119 |
tattcaaccaaagaacagaatctaaagcaaaagctttaccaggtaatgaaattgaagaagcattacctatggaaaaaatccgagtcaacgacatcacata |
218 |
Q |
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| T |
9213744 |
tattcaaccaaagaacagaatctaaagcaaaagatttaccaggtaatgaaattgaagaagcattacctatggaaaaaatccgagtcaacgacatcacata |
9213843 |
T |
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| Q |
219 |
gaaccattcagcatct |
234 |
Q |
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|||||||||||||||| |
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| T |
9213844 |
gaaccattcagcatct |
9213859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 9194383 - 9194168
Alignment:
| Q |
19 |
attacaccgttagttgtcggaatacaaatcaatgtttcaattccatgcacgtgtgcttcattggatctttcacagttatagatttgaagttcatgtttac |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
9194383 |
attacaccgttagttgtcggaatacaaatcagtgtttcgattccatgcatgtgtgcttcattggatctctcacaattatagatttgaagttcatgtttac |
9194284 |
T |
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| Q |
119 |
tattcaaccaaagaacagaatctaaagcaaaagctttaccaggtaatgaaattgaagaagcattacctatggaaaaaatccgagtcaacgacatcacata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| || |
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| T |
9194283 |
tattcaaccaaagaacagaatctaaagcaaaagctttaccaggtaatgaaattgaagaagcattacctatggaaaattttcgagttaacgacatcacgta |
9194184 |
T |
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| Q |
219 |
gaaccattcagcatct |
234 |
Q |
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|||||||||||||||| |
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| T |
9194183 |
gaaccattcagcatct |
9194168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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