View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_high_3 (Length: 536)
Name: NF10211_high_3
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_high_3 |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 33383484 - 33382969
Alignment:
| Q |
19 |
atatgcatagaaataacattgttgtgtggtatttcaatgcctaagcaaacccaactcctctattaaagcactcaaatctgagtaagatgatccttcttct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383484 |
atatgcatagaaataacattgttgtgtggtatttcaatgcctaagcaaacccaactcctctattaaagcactcaaatctgagtaagatgatccttcttct |
33383385 |
T |
|
| Q |
119 |
tccacagacctcttagctaactttgacaacaatttcactcttttcctcatttcctctacttcttcatcttccataatcctcttcacagctttttccagtg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383384 |
tccacagacctcttagctaactttgacaacaatttcactcttttcctcatttcctctacttcttcatcttccataatcctcttcacagctttttccagtg |
33383285 |
T |
|
| Q |
219 |
catcccattgaacact-atctccctccaatccaacccattttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaa |
317 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383284 |
catcccattgaacacttatctccctccaatccaacccattttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaa |
33383185 |
T |
|
| Q |
318 |
attgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383184 |
attgttcagcagcaacaggccaagtaacgataggtaccccagcaaccacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgc |
33383085 |
T |
|
| Q |
418 |
ttcgtgttcaagaatcaacgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaatccttctggtagccaatcttctcca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383084 |
ttcgtgttcaagaatcaacgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaatccttctggtagccaatcttctcca |
33382985 |
T |
|
| Q |
518 |
tcttctctgcttctcc |
533 |
Q |
| |
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|||||| ||||||||| |
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| T |
33382984 |
tcttctttgcttctcc |
33382969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 161 - 493
Target Start/End: Original strand, 33390713 - 33391045
Alignment:
| Q |
161 |
ttcctcatttcctctacttcttcatcttccataatcctcttcacagctttttccagtgcatcccattgaacactatctccctccaatccaacccattttt |
260 |
Q |
| |
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||||||||||||| | ||||||| ||||||||| | |||||||||| || |||| ||||||||| ||||| |||| | | || |||| ||||| ||| |
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| T |
33390713 |
ttcctcatttcctttgcttcttctccttccataaccttcttcacagccttctccactgcatcccaatgaactttatcactcacctttccatcccatgttt |
33390812 |
T |
|
| Q |
261 |
taactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagc |
360 |
Q |
| |
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|| |||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||| |||| ||| | ||||||||||| |||||||| ||||| |
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| T |
33390813 |
tagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatcataggtactccagc |
33390912 |
T |
|
| Q |
361 |
aactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttata |
460 |
Q |
| |
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| |||||| ||| ||| | | |||||||||||||||||||||| ||||||||| |||| |||| ||||||||| ||| || ||||||||||||||| |
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| T |
33390913 |
agctacactttccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctcttata |
33391012 |
T |
|
| Q |
461 |
attagtccctttccttccattcttttctcaaat |
493 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |
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| T |
33391013 |
attagtccctttcctttcattcttttctcaaat |
33391045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 401
Target Start/End: Original strand, 33401723 - 33401823
Alignment:
| Q |
301 |
caacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtc |
400 |
Q |
| |
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||||||||||||| |||||| ||||| | || |||||||| | |||||||| |||||| |||||||||||| ||| |||||||||||||||||| |
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| T |
33401723 |
caacttctcattgataaattgctcagctgaaagtggccaagtcgccataggtactccagcacacacaccttctaaagttgagttccatccacaatgagtc |
33401822 |
T |
|
| Q |
401 |
a |
401 |
Q |
| |
|
| |
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| T |
33401823 |
a |
33401823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 161 - 523
Target Start/End: Original strand, 27688480 - 27688842
Alignment:
| Q |
161 |
ttcctcatttcctctacttcttcatcttccataatcctcttcacagctttttccagtgcatcccattgaacactatctccctccaatccaacccattttt |
260 |
Q |
| |
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||||||||||| | | ||||||| ||||||||| |||||||||||| || |||| ||||||||||| |||| |||| || || |||||| |||| |
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| T |
27688480 |
ttcctcatttcatatgcttcttccccttccataaccctcttcacagccttctccactgcatcccattcaacattatccccaaccttcataacccactttt |
27688579 |
T |
|
| Q |
261 |
taactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagc |
360 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| || || || ||||||||||||| |||||||| ||||| |
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| T |
27688580 |
taactccaacaggtacaccagttttaagtacctcagtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaatcataggtactccagc |
27688679 |
T |
|
| Q |
361 |
aactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttata |
460 |
Q |
| |
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|| || ||||||||||| ||||||||||| ||||| ||||||||||| || |||||||| ||||||||||||| | ||| || ||||||||||||||| |
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| T |
27688680 |
taccactccttctaaaaccgaattccatccgcaatgcgtcacaaatgccccgattgcttcatgttcaagaatcatcacttgtggagaccaacctcttata |
27688779 |
T |
|
| Q |
461 |
attagtccctttccttccattcttttctcaaatccttctggtagccaatcttctccatcttct |
523 |
Q |
| |
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|||||||| ||||||||| |||||| ||| |||||||| |||||||| || |||||||||||| |
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| T |
27688780 |
attagtccttttccttccgttctttcctcgaatccttcaggtagccattcatctccatcttct |
27688842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 256 - 493
Target Start/End: Complemental strand, 18989693 - 18989456
Alignment:
| Q |
256 |
ttttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtacc |
355 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||| ||| ||| | ||||||||||| |||||||| |
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|
| T |
18989693 |
ttttttatctccaacaggtacaccaattttaagtacttcagttaccaacttctcattataaaattcctcaaaagctataggccaagtaatcataggtact |
18989594 |
T |
|
| Q |
356 |
ccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctc |
455 |
Q |
| |
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|||||| | |||| ||| ||| | | |||||||||||||||||||||||||||||||| |||| |||| || |||||| ||| | | |||||||| |
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| T |
18989593 |
ccagcagccacactttccaaagttaagttccatccacaatgagtcacaaatgctccaatagctttatgttgaaaaatcaaaagttgaagaggccaacctc |
18989494 |
T |
|
| Q |
456 |
ttataattagtccctttccttccattcttttctcaaat |
493 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||| |
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|
| T |
18989493 |
ttataattagtccttttcctttcattattttctcaaat |
18989456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 493
Target Start/End: Complemental strand, 19001937 - 19001890
Alignment:
| Q |
446 |
gaccaacctcttataattagtccctttccttccattcttttctcaaat |
493 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
19001937 |
gaccaacctcttataattagtccgtttcctttcatccttttctcaaat |
19001890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 27688392 - 27688444
Alignment:
| Q |
73 |
ctcctctattaaagcactcaaatctgagtaagatgatccttcttcttccacag |
125 |
Q |
| |
|
|||||| ||||| ||| |||| | ||||||||||||||| ||||||||||||| |
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|
| T |
27688392 |
ctcctcaattaaggcattcaactgtgagtaagatgatccatcttcttccacag |
27688444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 11646 - 11686
Alignment:
| Q |
376 |
aactgaattccatccacaatgagtcacaaatgctccaattg |
416 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| ||||||| |
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| T |
11646 |
aactgaattccaaccacaatgagtcaaaaatgcaccaattg |
11686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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