View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_high_33 (Length: 224)
Name: NF10211_high_33
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 34653276 - 34653467
Alignment:
| Q |
17 |
acacaattaaaaacaataacagaaataagaaaaagatccatgaaaacttcattagtcataaaccatactcgccttaaggatttctatagatcatacccat |
116 |
Q |
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| T |
34653276 |
acacaattaaaa-cagtaacagaaataagaaaaagatccatgaaaacttcattagtcataaaccatactcgccttaaggatttctatagatcatacccat |
34653374 |
T |
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| Q |
117 |
gaaatcaatttcctgcttcattggaacctcaggaaaaaactccattccatatgttccaaaatcataactcgttgtggtgccagatccacttgc |
209 |
Q |
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| T |
34653375 |
gaaatcaatttcctgcttcattggaacctcgggaaaaaactccattccatatgttccaaaatcataactcgttgtggtgccagatccacttgc |
34653467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 17173578 - 17173698
Alignment:
| Q |
89 |
cttaaggatttctatagatcatacccatgaaatcaatttcctgcttcattggaacctcaggaaaaaactccattccatatgttccaaaatcataactcgt |
188 |
Q |
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| T |
17173578 |
cttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaggaaaaaactcaattccatatgatccaaactcataattcat |
17173677 |
T |
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| Q |
189 |
tgtggtgccagatccacttgc |
209 |
Q |
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| T |
17173678 |
tgtggtaccagatccacttgc |
17173698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 13644155 - 13644067
Alignment:
| Q |
88 |
ccttaaggatttctatagatcatacccatgaaatcaatttcctgcttcattggaacctcaggaaaaaactccattccatatgttccaaa |
176 |
Q |
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| T |
13644155 |
ccttaagggtttctatatatcttctccatgaggtcaatttcctgctttttaggaatttcaggaaaaaactccattccatttgatccaaa |
13644067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 13706571 - 13706526
Alignment:
| Q |
121 |
tcaatttcctgcttcattggaacctcaggaaaaaactccattccat |
166 |
Q |
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| T |
13706571 |
tcaatttcctgctttataggaatttcaggaaaaaactccattccat |
13706526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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