View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_high_34 (Length: 223)
Name: NF10211_high_34
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 16898978 - 16898792
Alignment:
| Q |
23 |
atctaccttaagatctatctttctttgtttcttctagttctacaacataaaaataaaacactctttcaacatcaaacaacattaaaataactttgcatgc |
122 |
Q |
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| T |
16898978 |
atctaccttaagatctatctttctttgtttcttctagttctacaacataaaaataaaataccttttcaacatcaaacaacattaaaataacattgcatgc |
16898879 |
T |
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| Q |
123 |
actttagtttatattatagtacaaaacaatccacttaaccatgtttttaactacaactaagtcttatatttcattacctttcatctc |
209 |
Q |
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| T |
16898878 |
actttagtttatattatagtacaaaacaatccacttaaccatgtttttaactacaactaagtcttatatttcatcacctttcatctc |
16898792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 16901734 - 16901671
Alignment:
| Q |
142 |
tacaaaacaatccacttaaccatgtttttaactacaactaagtcttatatttcattacctttcat |
206 |
Q |
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| T |
16901734 |
tacaacacaatcc-cttaatcatgttttcatcaacaactaagtcttatacttcatcacctttcat |
16901671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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