View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_high_4 (Length: 517)
Name: NF10211_high_4
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 3702840 - 3703212
Alignment:
| Q |
1 |
tatttgttgtattttgatcattgttatatgcatctctgagaacatgattttattttttgctgtttgtttattta----cataatgttgaagtggctttgt |
96 |
Q |
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| T |
3702840 |
tatttgttgtattttgatcattgttatatgcatctctgagaacatgattttattttttgctgtttgtttatttatttacataatgttgatgtggctttgt |
3702939 |
T |
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| Q |
97 |
ataagataagatgtatggttagattcagagttgtaactcaattatatacactttcatagccaaataagagatcaattaataaaa-ttgcaacattctttt |
195 |
Q |
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| T |
3702940 |
ataagataagatgtatggttagattcagagttgtaactcaattatatacactttcatagccaaataagagatcaattaataaaaattgcaacattctttt |
3703039 |
T |
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| Q |
196 |
gtttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagttgatatagttaagttacatcagtattttaaaagcacacttcttaat |
295 |
Q |
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| T |
3703040 |
ctttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagttgatatagttaagttacatcagtattttaaaagcacacttcttaat |
3703139 |
T |
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| Q |
296 |
aatacttgttatcaagatatttgatagtccatgccaataataaaatctaacttctgcaaatgtatacacacaa |
368 |
Q |
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| T |
3703140 |
aatacttcttatcaagatatttgatagtccatgccaataataaaatctaacttctgcaaatgtatacatacaa |
3703212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 151 - 280
Target Start/End: Original strand, 3699346 - 3699475
Alignment:
| Q |
151 |
catagccaaataagagatcaattaataaaattgcaacattcttttgtttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagtt |
250 |
Q |
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| T |
3699346 |
catagccaaataagagatcaattaataaaattgcaacattcttttgtttcatggattattttgtatcattcctagtttacaatttattagaagatcaatt |
3699445 |
T |
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| Q |
251 |
gatatagttaagttacatcagtattttaaa |
280 |
Q |
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| T |
3699446 |
gatatagttcagttacatcattgttttaaa |
3699475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 3699153 - 3699231
Alignment:
| Q |
2 |
atttgttgtattttgatcattgttatatgcatctctgagaacatgattttattttttgctgtttgtttatttacataatgttg |
84 |
Q |
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| T |
3699153 |
atttgttgtattttgatcattgttttatgcatctctgagaacatgattttcttttttgc----tgtttatttacataatgttg |
3699231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 3699251 - 3699283
Alignment:
| Q |
80 |
tgttgaagtggctttgtataagataagatgtat |
112 |
Q |
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| T |
3699251 |
tgttgaagtggctttgtataagataagatgtat |
3699283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 484
Target Start/End: Original strand, 3703386 - 3703420
Alignment:
| Q |
450 |
tcacttgcatcattccttctaccacatatgttacc |
484 |
Q |
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| T |
3703386 |
tcacttgcatcattccctctaccacatatgttacc |
3703420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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