View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10211_high_5 (Length: 502)
Name: NF10211_high_5
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 24)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 30186651 - 30186173
Alignment:
| Q |
1 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30186651 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
30186552 |
T |
|
| Q |
101 |
ttggtgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30186551 |
ttggcgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
30186452 |
T |
|
| Q |
201 |
tttgcatgaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30186451 |
tttgcatgaggaggatagttggaaattgtttgagaaaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
30186352 |
T |
|
| Q |
301 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgaggnnnnnnnngatctttgattggcaaaacacattaaatgatttagagagatttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30186351 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgaggaaaaaaaagatctttgattggcaaaacacattaaatgatttagagagatttg |
30186252 |
T |
|
| Q |
401 |
atcaagaagggctgcataacgacaagagaatcaattctactttggagttgagttataatttcctagaaagtgatgaact |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30186251 |
atcaagaagggctgcataacgacaagagaatcaattctactttggagttgagttataatttcctagaaagtgatgaact |
30186173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 30250035 - 30250382
Alignment:
| Q |
1 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
100 |
Q |
| |
|
|||||| ||||||| || ||||||| ||| |||||| |||| | |||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
30250035 |
gcaagacaattacgtgaaaggataaccaaggagaagaatattatcgttattttggatgatatatggggcagacttgatttggaagaagtggggattcctt |
30250134 |
T |
|
| Q |
101 |
ttggtgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30250135 |
ttggtgatgaccacaaaggatgcaagttggtggtgacatccagagatcttaatgtgttaagctgtgagatgggcactcagaaagaatttagacttgaagt |
30250234 |
T |
|
| Q |
201 |
tttgcatgaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
300 |
Q |
| |
|
||| |||||||| ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||| |||||||| | ||||| ||| || |
|
|
| T |
30250235 |
tttacatgaggacgatagttggaaattgtttgtgaaaatgacaggtgatgttgttcaagaattcaatataaagcccattgcagtaaaagtggcaaaatgt |
30250334 |
T |
|
| Q |
301 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgagg |
348 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| || || |||||||||||| |
|
|
| T |
30250335 |
tgtgctggtttaccccttttgatagttacagtagcaaaggctttgagg |
30250382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 32 - 347
Target Start/End: Original strand, 30090423 - 30090738
Alignment:
| Q |
32 |
agaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattccttttggtgacgaccacaaaggatgcaagttagt |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
30090423 |
agaagagtattcttgttattctggatgacatttggggtagacttgatttggtagaagtggggattccttttggtgatgaccacaaaggatgcaagttggt |
30090522 |
T |
|
| Q |
132 |
ggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagctttgcatgaggaggatagttggaaattgttt |
231 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||||||| || |||||||| ||| ||| |||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
30090523 |
ggtgacatccagagatcttaatgtgttaaactgtgagatgaacattcagaaagcatttagaattgatgttttgcatcaggaggatagttggaaattgttt |
30090622 |
T |
|
| Q |
232 |
gagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgttgtgcaggtttgccccttttgattgttactg |
331 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||| ||||||||||||||||| || || ||||||| | ||||||| | || || |||||||| ||||||| |
|
|
| T |
30090623 |
gagaaaatggcaggtgatattgttcatgaatttaatataaagccaattgcggtagaagtggccagatgttgtgccgagttacctcttttgatagttactg |
30090722 |
T |
|
| Q |
332 |
ttgctaaggctttgag |
347 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
30090723 |
tggcgaaggctttgag |
30090738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 32 - 347
Target Start/End: Original strand, 30127028 - 30127343
Alignment:
| Q |
32 |
agaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattccttttggtgacgaccacaaaggatgcaagttagt |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
30127028 |
agaagagtattcttgttattctggatgacatttggggtagacttgatttggtagaagtggggattccttttggtgatgaccacaaaggatgcaagttggt |
30127127 |
T |
|
| Q |
132 |
ggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagctttgcatgaggaggatagttggaaattgttt |
231 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||||||| || |||||||| ||| ||| |||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
30127128 |
ggtgacatccagagatcttaatgtgttaaactgtgagatgaacattcagaaagcatttagaattgatgttttgcatcaggaggatagttggaaattgttt |
30127227 |
T |
|
| Q |
232 |
gagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgttgtgcaggtttgccccttttgattgttactg |
331 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||| ||||||||||||||||| || || ||||||| | ||||||| | || || |||||||| ||||||| |
|
|
| T |
30127228 |
gagaaaatggcaggtgatattgttcatgaatttaatataaagccaattgcggtagaagtggccagatgttgtgccgagttacctcttttgatagttactg |
30127327 |
T |
|
| Q |
332 |
ttgctaaggctttgag |
347 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
30127328 |
tggcgaaggctttgag |
30127343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 32 - 347
Target Start/End: Original strand, 30221881 - 30222196
Alignment:
| Q |
32 |
agaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattccttttggtgacgaccacaaaggatgcaagttagt |
131 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || |
|
|
| T |
30221881 |
agaagagtattcttgttattcttgatgatatctggggtagacttgatttggtagaagtggggattccttttggggatgaccacaaaggatgcaagttggt |
30221980 |
T |
|
| Q |
132 |
ggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagctttgcatgaggaggatagttggaaattgttt |
231 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||||||| || |||||||| || |||||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
30221981 |
ggtgacatccagagatcttaatgtgttaaactgtgagatgaacattcagaaagcttttagacttgatgttttgcatcaggaggatagttggaaattgttt |
30222080 |
T |
|
| Q |
232 |
gagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgttgtgcaggtttgccccttttgattgttactg |
331 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||| ||||||||||||||||| || || ||||||| | ||||||| || || || |||||||| ||||||| |
|
|
| T |
30222081 |
gagaaaatggcaggtgatattgttcatgaatttaatataaagccaattgcggtagaagtggccagatgttgtgccgggttacctcttttgatagttactg |
30222180 |
T |
|
| Q |
332 |
ttgctaaggctttgag |
347 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
30222181 |
tggcgaaggctttgag |
30222196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 30788379 - 30788851
Alignment:
| Q |
1 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
100 |
Q |
| |
|
|||||| |||||| || ||||||| ||| |||||| |||||| || || ||||||| || ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30788379 |
gcaagacaattacttgaaaggataaccaaggagaagaatattctcattgttttggatgatatatggggtagacttgatttggaagaagtggggattcctt |
30788478 |
T |
|
| Q |
101 |
ttggtgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
30788479 |
ttggtgatgaccacaaaggatgcaagttggtggtgacatctagagaccttaatgtgttgaaccgtgagattggcactcaaaaagaatttagacttgaagt |
30788578 |
T |
|
| Q |
201 |
tttgcatgaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
300 |
Q |
| |
|
||| | |||||| |||||||||||||| ||||||| |||||||||||||||||||||||| || ||||| || ||||||||||| || ||||||| || |
|
|
| T |
30788579 |
tttacttgaggaagatagttggaaattatttgagaaaatggcaggtgatgttgttcaagattttaatattaaaccaattgcagtagaagtggccatttgt |
30788678 |
T |
|
| Q |
301 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgaggnnnnnnnngatctttgattggcaaaacacattaaatgatttagagagatttg |
400 |
Q |
| |
|
||||| |||||||||||| |||||||| | || || || ||||||||| ||| ||||||| ||| |||||||||||| ||| | ||||||| |
|
|
| T |
30788679 |
tgtgctggtttgccccttctgattgttgcagtggcaaaagctttgaggaaaaaaaaattctatgattggaaaagcacattaaatgagttaaatagatttg |
30788778 |
T |
|
| Q |
401 |
atcaagaagggctgcataacgacaagagaatcaattctactttggagttgagttataatttcctagaaagtgatgaact |
479 |
Q |
| |
|
|| |||||||| ||||| |||| |||| | ||| |||| || ||||||||||||| | |||||||||||||||| |
|
|
| T |
30788779 |
ataaagaagggttgcat------aagaaaatctactctgctttagaattgagttataattgcttagaaagtgatgaact |
30788851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 30066323 - 30066790
Alignment:
| Q |
1 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
100 |
Q |
| |
|
||||||||||| || || ||||||| ||| ||||||||||||||||| | || |||||||| ||| | | | |||| ||| |||| ||||| |||| | |
|
|
| T |
30066323 |
gcaagagaattgcgtgaaaggataaccaaggagaagagtattcttgttgtgctagatgacatttggaggaaaattgaattgacagaactgggggttccat |
30066422 |
T |
|
| Q |
101 |
ttggtgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
200 |
Q |
| |
|
||||| | || || |||||||| ||| | |||||||||||||||||||| ||| |||||||||||||| | || ||||||| ||||| |||||||||| |
|
|
| T |
30066423 |
ttggtaatgatcataaaggatgtaaggtggtggtgacatctagagatctaaatttgttgagctgtgagtttggtactcaga--gaatttagacttgaagt |
30066520 |
T |
|
| Q |
201 |
tttgcatgaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
300 |
Q |
| |
|
||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||| |||| |
|
|
| T |
30066521 |
tttaaatgaggaggatagttggcaattgtttaagaaaatggcaggtgatgttgttcaagatttcaatataaaaccaattgcagtagaagtggccagacgt |
30066620 |
T |
|
| Q |
301 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgaggnnnnnnnngatctttgattggcaaaacacattaaatgatttagagagatttg |
400 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| || |||||||||||| |||||||||||| ||| ||| |||||||| ||||||||||||| |
|
|
| T |
30066621 |
tgtgctggttttccgcttttgattgttactgtggcaaaggctttgaggaagaaaaaaatctttgattggaaaagcacgttaaatgagttagagagatttg |
30066720 |
T |
|
| Q |
401 |
atcaagaagggctgcataacgacaagagaatcaattctactttggagttgagttataatttcctagaaagtgatga |
476 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||| ||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
30066721 |
atcaagaagggctgcat------aagaaaatatattctgctttggaattgagttataattgcctagaaagtgatga |
30066790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 30009826 - 30010295
Alignment:
| Q |
1 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
100 |
Q |
| |
|
||||||||||| || || ||||||| ||| ||||||||||||||||| | ||||||||||| ||| | |||||||| | | |||| ||||| |||| | |
|
|
| T |
30009826 |
gcaagagaattgcgtgaaaggataaccaaggagaagagtattcttgttgtgctggatgacatttggaggagacttgaatcgacagaactgggggttccat |
30009925 |
T |
|
| Q |
101 |
ttggtgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
200 |
Q |
| |
|
||||| | || || |||||||| ||| | |||||||||||||||||| | ||| |||||||||||||| | || ||||||| |||||| |||||||||| |
|
|
| T |
30009926 |
ttggtaatgatcataaaggatgtaaggtggtggtgacatctagagatatgaatttgttgagctgtgagtttggtactcagagagaatttagacttgaagt |
30010025 |
T |
|
| Q |
201 |
tttgcatgaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
300 |
Q |
| |
|
||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||||| ||||||| ||| | ||||||| |||| |
|
|
| T |
30010026 |
tttaaatgaggaggatagttggcaattgtttaagaaaatggcaggtgatgttgttcaagatttcaatataaaaccaattgtagtaaaagtggccagacgt |
30010125 |
T |
|
| Q |
301 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgaggnnnnnnnngatctttgattggcaaaacacattaaatgatttagagagatttg |
400 |
Q |
| |
|
||||| || || || ||||||||||||||||| || |||||||| ||| |||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
30010126 |
tgtgctggatttccgcttttgattgttactgtggcaaaggcttttaggaagaaaaaaatctttgattggaaaagcacattaaatgagttagagagatttg |
30010225 |
T |
|
| Q |
401 |
atcaagaagggctgcataacgacaagagaatcaattctactttggagttgagttataatttcctagaaagtgatga |
476 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||| ||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
30010226 |
atcaagaagggctgcat------aagaaaatatattctgctttggaattgagttataattgcctagaaagtgatga |
30010295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 30169310 - 30169656
Alignment:
| Q |
1 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
100 |
Q |
| |
|
|||||| ||||||| || ||||||| ||| |||||| ||||||||||||||| |||||||||||||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
30169310 |
gcaagacaattacgtgaaaggataaggaaggagaagaatattcttgttattcttgatgacatctgggggagaattgatttgacagaagtggggattcctt |
30169409 |
T |
|
| Q |
101 |
ttggtgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
200 |
Q |
| |
|
||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
30169410 |
ttggtgatgattacaaaggatgcaagttggtggtgacatccagagatcttaatgtgttaaactgtgagatgggcattcaaaaagaatttagacttgaagt |
30169509 |
T |
|
| Q |
201 |
tttgcatgaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
300 |
Q |
| |
|
||| || | ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||| || ||||| | || |
|
|
| T |
30169510 |
tttacaacaagaggatagttggaaattgtttgagaaaatggcaggtgatattgttcatgaattaaatataaagccaattgcagtagaagtggcaaggtgt |
30169609 |
T |
|
| Q |
301 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgag |
347 |
Q |
| |
|
||||| || |||||||||||||| ||||| || || ||||||||||| |
|
|
| T |
30169610 |
tgtgctgggttgccccttttgatagttacagtggcgaaggctttgag |
30169656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 30277642 - 30277982
Alignment:
| Q |
8 |
aattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattccttttggtga |
107 |
Q |
| |
|
||||||| || ||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||| ||||||||||| | |
|
|
| T |
30277642 |
aattacgggaaaggataaccaaggagaagagtattcttgttattctggatgacatttgggggagacttgatttggcagatctgggggttccttttggtaa |
30277741 |
T |
|
| Q |
108 |
cgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagctttgcat |
207 |
Q |
| |
|
|| ||||||||||||||||| ||||| |||| |||||||||||||| |||| | ||||||| |||||||| |||||||| |||||||||| ||| | |
|
|
| T |
30277742 |
tgatcacaaaggatgcaagttggtggtttcatccagagatcttaatgtcttgaaccgtgagattggcactcaaaaagaatttagacttgaagttttattt |
30277841 |
T |
|
| Q |
208 |
gaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgttgtgcag |
307 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| | | |
|
|
| T |
30277842 |
gaggatgatagttggaaattatttgagaaaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagaaaaagtggccaaatgttgttctg |
30277941 |
T |
|
| Q |
308 |
gtttgccccttttgattgttactgttgctaaggctttgagg |
348 |
Q |
| |
|
|||||||||||||||| ||||| || || |||||||||||| |
|
|
| T |
30277942 |
gtttgccccttttgatagttacagtggcaaaggctttgagg |
30277982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 30135784 - 30135437
Alignment:
| Q |
1 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
100 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||| |||||||||||||| |||||||||| ||||| |||||||||||| |||| | ||| |||||| |
|
|
| T |
30135784 |
gcaagagaattacgtgataggataaccaaggagaagcgtattcttgttattttggatgacatttgggggagacttgatttgacagaactaggggttcctt |
30135685 |
T |
|
| Q |
101 |
ttggtgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
200 |
Q |
| |
|
||||| | || |||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
30135684 |
ttggtaatgatcacaaaggatgcaaattggtggtgacatccagagatcttaatgtgttgatttgtgagatgggcactcaaaaagaatttagacttgaagt |
30135585 |
T |
|
| Q |
201 |
tttgcatgaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
300 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| | |||| |||||| || |
|
|
| T |
30135584 |
tttacttgaggaggatagctggaaattgtttgagaagatggcaggtgatgttgttcacgaattcaatataaaaccaattgcgataaaggttgccaaatgt |
30135485 |
T |
|
| Q |
301 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgagg |
348 |
Q |
| |
|
||||| ||||||||||||||||| || ||| || |||||||||||| |
|
|
| T |
30135484 |
tgtgctggtttgccccttttgatagtcactacggcaaaggctttgagg |
30135437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 30021105 - 30021452
Alignment:
| Q |
1 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
100 |
Q |
| |
|
||||| |||||||| |||||||||| ||| ||||| |||||||||||||| |||||||||| ||||| |||||||||||| |||| ||||| |||||| |
|
|
| T |
30021105 |
gcaagcgaattacgtgataggataaccaaggagaagcgtattcttgttattttggatgacatttgggggagacttgatttgacagaactgggggttcctt |
30021204 |
T |
|
| Q |
101 |
ttggtgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
200 |
Q |
| |
|
| ||| | || |||||||||||||| || |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
30021205 |
tcggtaatgatcacaaaggatgcaaattggtggtgacatctagagatcttaatgtcttgatttgtgagatgggcactcaaaaagaatttagacttgaagt |
30021304 |
T |
|
| Q |
201 |
tttgcatgaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
300 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| | |||| |||||| || |
|
|
| T |
30021305 |
tttacttgaggaggatagctggaaattgtttgagaagatggcaggtgatgttgttcacgaattcaatataaaaccaattgcgataaaggttgccaaatgt |
30021404 |
T |
|
| Q |
301 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgagg |
348 |
Q |
| |
|
||||| ||||||||||||||||| || ||| || |||||||||||| |
|
|
| T |
30021405 |
tgtgctggtttgccccttttgatagtcactacggcaaaggctttgagg |
30021452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 30039590 - 30039243
Alignment:
| Q |
1 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
100 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||| |||||||||||||| |||||||||| ||||| |||||||||||| |||| | ||| |||||| |
|
|
| T |
30039590 |
gcaagagaattacgtgataggataaccaaggagaagcgtattcttgttattttggatgacatttgggggagacttgatttgacagaactaggggttcctt |
30039491 |
T |
|
| Q |
101 |
ttggtgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
200 |
Q |
| |
|
||||| | || |||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
30039490 |
ttggtaatgatcacaaaggatgcaaattggtggtgacatccagagatcttaatgtgttgatttgtgagatgcgcactcaaaaagaatttagacttgaagt |
30039391 |
T |
|
| Q |
201 |
tttgcatgaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
300 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| | |||| |||||| || |
|
|
| T |
30039390 |
tttacttgaggaggatagctggaaattgtttgagaagatggcaggtgatgttgttcacgaattcaatataaaaccaattgcgataaaggttgccaaatgt |
30039291 |
T |
|
| Q |
301 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgagg |
348 |
Q |
| |
|
||||| ||||||||||||||||| || ||| || |||||||||||| |
|
|
| T |
30039290 |
tgtgctggtttgccccttttgatagtcactacggcaaaggctttgagg |
30039243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 30109068 - 30108721
Alignment:
| Q |
1 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
100 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||| |||||||||||||| |||||||||| ||||| |||||||||||| |||| | ||| |||||| |
|
|
| T |
30109068 |
gcaagagaattacgtgataggataaccaaggagaagcgtattcttgttattttggatgacatttgggggagacttgatttgacagaactaggggttcctt |
30108969 |
T |
|
| Q |
101 |
ttggtgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
200 |
Q |
| |
|
||||| | || |||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
30108968 |
ttggtaatgatcacaaaggatgcaaattggtggtgacatccagagatcttaatgtgttgatttgtgagatgcgcactcaaaaagaatttagacttgaagt |
30108869 |
T |
|
| Q |
201 |
tttgcatgaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
300 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| | |||| |||||| || |
|
|
| T |
30108868 |
tttacttgaggaggatagctggaaattgtttgagaagatggcaggtgatgttgttcacgaattcaatataaaaccaattgcgataaaggttgccaaatgt |
30108769 |
T |
|
| Q |
301 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgagg |
348 |
Q |
| |
|
||||| ||||||||||||||||| || ||| || |||||||||||| |
|
|
| T |
30108768 |
tgtgctggtttgccccttttgatagtcactacggcaaaggctttgagg |
30108721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 30079511 - 30079858
Alignment:
| Q |
1 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
100 |
Q |
| |
|
||||| |||||||| |||||||||| ||| ||||| |||||||||||||| |||||||||| ||||| |||||||||||| |||| | ||| |||||| |
|
|
| T |
30079511 |
gcaagtgaattacgtgataggataaccaaggagaagcgtattcttgttattttggatgacatttgggggagacttgatttgacagaactaggggttcctt |
30079610 |
T |
|
| Q |
101 |
ttggtgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
200 |
Q |
| |
|
||||| | || |||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
30079611 |
ttggtaatgatcacaaaggatgcaaattggtggtgacatccagagatcttaatgtgttgatttgtgagatgcgcactcaaaaagaatttagacttgaagt |
30079710 |
T |
|
| Q |
201 |
tttgcatgaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
300 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| | |||| |||||| || |
|
|
| T |
30079711 |
tttacttgaggaggatagctggaaattgtttgagaagatggcaggtgatgttgttcacgaattcaatataaaaccaattgcgataaaggttgccaaatgt |
30079810 |
T |
|
| Q |
301 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgagg |
348 |
Q |
| |
|
||||| ||||||||||||||||| || ||| || |||||||||||| |
|
|
| T |
30079811 |
tgtgctggtttgccccttttgatagtcactacggcaaaggctttgagg |
30079858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 30233728 - 30233381
Alignment:
| Q |
1 |
gcaagagaattacgagataggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattcctt |
100 |
Q |
| |
|
||||| |||||||| |||||||||| ||| ||||| |||||||||||||| |||||||||| ||||| |||||||||||| |||| | ||| |||||| |
|
|
| T |
30233728 |
gcaagtgaattacgtgataggataaccaaggagaagcgtattcttgttattttggatgacatttgggggagacttgatttgacagaacttggggttcctt |
30233629 |
T |
|
| Q |
101 |
ttggtgacgaccacaaaggatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagc |
200 |
Q |
| |
|
||||| | || |||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
30233628 |
ttggtaatgatcacaaaggatgcaaattggtggtgacatccagagatcttaatgtgttgatttgtgagatgcgcactcaaaaagaatttagacttgaagt |
30233529 |
T |
|
| Q |
201 |
tttgcatgaggaggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgt |
300 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| | |||| |||||| || |
|
|
| T |
30233528 |
tttacttgaggaggatagctggaaattgtttgagaagatggcaggtgatgttgttcacgaattcaatataaaaccaattgcgataaaggttgccaaatgt |
30233429 |
T |
|
| Q |
301 |
tgtgcaggtttgccccttttgattgttactgttgctaaggctttgagg |
348 |
Q |
| |
|
||||| ||||||||||||||||| || ||| || |||||||||||| |
|
|
| T |
30233428 |
tgtgctggtttgccccttttgatagtcactacggcaaaggctttgagg |
30233381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 348
Target Start/End: Complemental strand, 30120875 - 30120739
Alignment:
| Q |
212 |
aggatagttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagtggaggtggccaaacgttgtgcaggttt |
311 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| | |||| |||||| ||||||| ||||| |
|
|
| T |
30120875 |
aggatagctggaaattgtttgagaagatggcaggtgatgttgttcacgaattcaatataaaaccaattgcgataaaggttgccaaatgttgtgctggttt |
30120776 |
T |
|
| Q |
312 |
gccccttttgattgttactgttgctaaggctttgagg |
348 |
Q |
| |
|
|||||||||||| || ||| || |||||||||||| |
|
|
| T |
30120775 |
gccccttttgatagtcactacggcaaaggctttgagg |
30120739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 30021483 - 30021523
Alignment:
| Q |
379 |
ttaaatgatttagagagatttgatcaagaagggctgcataa |
419 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
30021483 |
ttaaatgaattacagagatttgatcaagaagggttgcataa |
30021523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 30039212 - 30039172
Alignment:
| Q |
379 |
ttaaatgatttagagagatttgatcaagaagggctgcataa |
419 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
30039212 |
ttaaatgaattacagagatttgatcaagaagggttgcataa |
30039172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 30079889 - 30079929
Alignment:
| Q |
379 |
ttaaatgatttagagagatttgatcaagaagggctgcataa |
419 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
30079889 |
ttaaatgaattacagagatttgatcaagaagggttgcataa |
30079929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 30108690 - 30108650
Alignment:
| Q |
379 |
ttaaatgatttagagagatttgatcaagaagggctgcataa |
419 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
30108690 |
ttaaatgaattacagagatttgatcaagaagggttgcataa |
30108650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 30120708 - 30120668
Alignment:
| Q |
379 |
ttaaatgatttagagagatttgatcaagaagggctgcataa |
419 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
30120708 |
ttaaatgaattacagagatttgatcaagaagggttgcataa |
30120668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 30233350 - 30233310
Alignment:
| Q |
379 |
ttaaatgatttagagagatttgatcaagaagggctgcataa |
419 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
30233350 |
ttaaatgaattacagagatttgatcaagaagggttgcataa |
30233310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 30278013 - 30278053
Alignment:
| Q |
379 |
ttaaatgatttagagagatttgatcaagaagggctgcataa |
419 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
30278013 |
ttaaatgaattagagagatttgatgaagaagggttgcataa |
30278053 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 7e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 30271712 - 30271975
Alignment:
| Q |
19 |
aggataaaaaagaagaagagtattcttgttattctggatgacatctggggtagacttgatttggtagaagtggggattccttttggtgacgaccacaaag |
118 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||| || |||||||||||||| |||| ||| ||||||||||||| |||||| || ||||||| |
|
|
| T |
30271712 |
aggataaccaaggagaagagtattcttgttattctggatgatatatggggtagacttgaattggaagaggtggggattccttgtggtgatgatcacaaag |
30271811 |
T |
|
| Q |
119 |
gatgcaagttagtggtgacatctagagatcttaatgtgttgagctgtgagatgggcactcagaaagaattcagacttgaagctttgcatgaggaggatag |
218 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||| |||||||| ||| |||||| | ||||| |
|
|
| T |
30271812 |
gatgcaagttggtggtgatatccgaagatcttaatgtgttgaatcgtgagatgggcactcaaaaagaatt--gacttgaaattttacatgagcaagatag |
30271909 |
T |
|
| Q |
219 |
ttggaaattgtttgagagaatggcaggtgatgttgttcaagaattcaatataaagccaattgcagt |
284 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
30271910 |
ttggaaattgtttgagaaaatggcaggtgatgttgttcaagatttcaatataaaaccaattgcagt |
30271975 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 473
Target Start/End: Original strand, 30272023 - 30272132
Alignment:
| Q |
358 |
atctttgattggcaaaacacattaaatgatttagagagatttgatcaagaagggctgcataacgacaagagaatcaattctactttggagttgagttata |
457 |
Q |
| |
|
|||||||||||| ||| ||||| ||||| |||||||||||||||||| ||||| ||||| |||| |||| ||||||||||||| |||||||||| |
|
|
| T |
30272023 |
atctttgattggaaaagtacattgaatgagttagagagatttgatcaaaaagggttgcat------aagaaaatctattctactttggaattgagttata |
30272116 |
T |
|
| Q |
458 |
atttcctagaaagtga |
473 |
Q |
| |
|
||| | |||||||||| |
|
|
| T |
30272117 |
attgcttagaaagtga |
30272132 |
T |
|
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