View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_1 (Length: 961)
Name: NF10211_low_1
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 551; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 20 - 610
Target Start/End: Original strand, 13308464 - 13309054
Alignment:
| Q |
20 |
acccgagactatgcttaagggatccaaattcagttccactatgaccaaggtaatggtggttcactagtacatctttaaatcaccaactaagaaaaataac |
119 |
Q |
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| T |
13308464 |
acccgagactatgcttaagggatccaaattcagttccactatgaccaaggtaatggtggttcactagtaaatctttaaatcaccaactaagaaaaataac |
13308563 |
T |
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| Q |
120 |
aattagctcaccaaatctatggcaccgcactaagcatgacaagacccataaataaatcaagtacatgaggataacaaaagagaaatactcactgagtgta |
219 |
Q |
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| T |
13308564 |
gattagctcaccaaatctatggcaccgcactaagcatgacaagacccataaataaatcaagtacatgaggataacaaaagagaaatactcactgagtgta |
13308663 |
T |
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| Q |
220 |
atagtaaaatgttgtgccatgactgacatggattttggcaattagtgatgccaaaagagaagagaatgagataactcgaaaagcgagcaaacaaacaggg |
319 |
Q |
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| T |
13308664 |
atagtaaaatgttgtgccatgactgacatggattttggcaattagtgatgccaaaagagaagagaatgagataactcgaaaaactagcaaacaaacaggg |
13308763 |
T |
|
| Q |
320 |
tgaatgtccttaaggcatggcttccacgcttcatcgccacacaaaatactctgattttctccgttgtcaaatgtgagatttcttgaactttcacgcttcc |
419 |
Q |
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| T |
13308764 |
tgaatgtccttaaggcatggcttccacgcttcatcgccacacaaagtactctggttttctccgttgtcaaatgtgagattccttgaactttcacgcttcc |
13308863 |
T |
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| Q |
420 |
acattgttagacatgcaaggatcatagacagcaaaacagaaactacgcaaatatagaccctccaatttaaccaataactgagggtggttgaatcagttgc |
519 |
Q |
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| T |
13308864 |
atattgttagacatgcaaggatcatagacagcaaaacagaaactacgcaaatatagaccctccaatttaaccaataactgagggtggttgaatcagttgc |
13308963 |
T |
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| Q |
520 |
atcgtccagttgcatcctcctgataaagaaaacaacattgctacatgaaaaacatcatgacagaaaaccaatttcactaaattacgcaatt |
610 |
Q |
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| T |
13308964 |
atcgtccagttgcatcctcctgataaagaaaacaacattgctacatgaaaaacatcatgaaagaaaaccaattttactaaattacgcaatt |
13309054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 706 - 899
Target Start/End: Original strand, 13309295 - 13309488
Alignment:
| Q |
706 |
ttactatgattatgctagaagacgtgtgcatatcttttacggattaagttgatatgcatcgacaatgtaaatatttttcacatgtcaagtaatcataact |
805 |
Q |
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| T |
13309295 |
ttactatgattatgctagaagacgtgtgcatatcttttacggattaagttgatatgcatcgacaatgtaaatatttttcacatgtcaagtaatcataact |
13309394 |
T |
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| Q |
806 |
atttgatcattacagatatttgaatttaaacacatctaccttaaaaatcatactaatgatggatcatgattggttgacagcataaaagaattaa |
899 |
Q |
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| T |
13309395 |
atttgatcattacagatatttgaatttaaacacatctaccttaaaaatcatactaatgatggatcatgattggttgacagcataaaagaattaa |
13309488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 788 - 851
Target Start/End: Original strand, 27839429 - 27839491
Alignment:
| Q |
788 |
tgtcaagtaatcataactatttgatcattacagatatttgaatttaaacacatctaccttaaaa |
851 |
Q |
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| T |
27839429 |
tgtcaattaatcataaccattagatcattacagata-ttgactttaatcatatctaccttaaaa |
27839491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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