View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10211_low_11 (Length: 488)
Name: NF10211_low_11
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 329
Target Start/End: Original strand, 39110538 - 39110853
Alignment:
| Q |
14 |
ttaaccctatggtaaccattcaatctacagcatactgtattgctagtaaaattgcagaatcacttaaggaagaatagacagagattgatgaataataatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39110538 |
ttaaccctatggtaaccattcaatctacagcatactgtattgctagtaaaattgcagaatcacttaaggaagaatagacagagattgatgaataataatg |
39110637 |
T |
|
| Q |
114 |
aagtttgtattatttcaataaaagaatttcattgaaaatgtacatgtacttttcgnnnnnnnacatgatgtaactagtattgctggtgttaacaaaataa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39110638 |
aagtttgtattatttcaataaaagaatttcattgaaaatgtacatgtacttttcgtttttttacatgatgtaactagtattgctggtgttaacaaaataa |
39110737 |
T |
|
| Q |
214 |
agtttcatgtaaatgtgtcaaagtttattatgcgagactaactagcaatgaaatttaaatcctctcgtaactaaatccaatcggaggggtgattctattg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39110738 |
agtttcatgtaaatgtgtcaaagtttattatgcgagactaactagcaatggaatttaaatcctctcgtaactaaatccaatcggaggggtgattctattg |
39110837 |
T |
|
| Q |
314 |
gtgatttcacccttaa |
329 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39110838 |
gtgatttcacccttaa |
39110853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 425 - 476
Target Start/End: Original strand, 39110949 - 39111000
Alignment:
| Q |
425 |
ctctattgctttgattttttgtcaatacttcgttttcattgtaaattatgat |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39110949 |
ctctattgctttgattttttgtcaatacttcattttcattgtaaattatgat |
39111000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 469
Target Start/End: Original strand, 35897786 - 35897830
Alignment:
| Q |
426 |
tctattgctttgattttt-tgtcaatacttcgttttcattgtaaa |
469 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
35897786 |
tctattgctttgatttttgtgtcaatacttcattttcattgtaaa |
35897830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University