View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_12 (Length: 474)
Name: NF10211_low_12
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Complemental strand, 53775491 - 53775047
Alignment:
| Q |
19 |
acaatcttgtactagaaatacaggtagcgacaaaaaatatgaccatgttcattgttaaacattttgatttttctttaacaattataagcatttgtgtttt |
118 |
Q |
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| T |
53775491 |
acaatcttgtactagaaatacaggtagcgacaaaaaatatgaccatgttcattgttaaacattttgatttttctttaacaattataagcatttgtgcttt |
53775392 |
T |
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| Q |
119 |
tattgaagggaaccatacgttcagattctaagaatccatcacgcttagcaatgtggaaaggggttatgtttgcttatctagtcatcgcctcttgtttgtt |
218 |
Q |
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| T |
53775391 |
tattgaagggaaccatacgttcagattctaagaatccatcacgcttagcaatgtggaaaggggttatgtttgcttatctagtcatcgcctcttgtttgtt |
53775292 |
T |
|
| Q |
219 |
tcccctagccattggaggatattgggcctatggaaatttagtaagtgctttttcaactagggagtaacttttttcatcaccaaggtctctttagatgtgt |
318 |
Q |
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| T |
53775291 |
tcccctagccattggaggatattgggcctatggaaatttagtaagtgctttttcaactagggagtaacttttttcatcaccaaggtctctttagatgtgt |
53775192 |
T |
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| Q |
319 |
acatcagaagaaagnnnnnnnnngagtttttgtgtcgtttgaatgtttatttttggacaaaattgcgtatttatcctatctcaatgtgcaagtttttaga |
418 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
53775191 |
acatcagaagaaagaaaaaaaaagagtttttgtgtcgtttgaatgtttatttttggacaaaattgcatatttatcatatctcaatgtgcaagtttttaga |
53775092 |
T |
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| Q |
419 |
atcatgaggccgataaagttgcttcatttcaaacattagcttcat |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53775091 |
atcatgaggccgataaagttgcttcatttcaaacattagcttcat |
53775047 |
T |
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