View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10211_low_13 (Length: 466)

Name: NF10211_low_13
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10211_low_13
NF10211_low_13
[»] chr6 (6 HSPs)
chr6 (20-449)||(13855326-13855755)
chr6 (20-189)||(13849536-13849706)
chr6 (329-449)||(13851773-13851893)
chr6 (276-330)||(33303630-33303684)
chr6 (280-329)||(13851711-13851760)
chr6 (298-330)||(9195788-9195820)
[»] chr1 (2 HSPs)
chr1 (276-329)||(34298407-34298460)
chr1 (281-329)||(10572624-10572672)
[»] chr8 (1 HSPs)
chr8 (329-385)||(34897122-34897178)
[»] chr7 (4 HSPs)
chr7 (327-378)||(38143258-38143309)
chr7 (292-330)||(927871-927909)
chr7 (281-329)||(27945017-27945065)
chr7 (286-330)||(30516391-30516435)
[»] chr5 (1 HSPs)
chr5 (280-329)||(22423847-22423896)
[»] chr4 (2 HSPs)
chr4 (292-329)||(43061708-43061745)
chr4 (281-329)||(22440635-22440683)
[»] chr3 (2 HSPs)
chr3 (276-329)||(12674536-12674589)
chr3 (294-330)||(35335590-35335626)
[»] scaffold0122 (1 HSPs)
scaffold0122 (281-321)||(8642-8682)
[»] chr2 (1 HSPs)
chr2 (294-330)||(37497109-37497145)


Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 449
Target Start/End: Original strand, 13855326 - 13855755
Alignment:
Q  20 attgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatccgagaacggaggtgatgaaggagtttttggaggatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13855326 attgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatccgagaacggaggtgatgaaggagtttttggaggatg 13855425  T
Q  120 gggagaagtttggaaaggttaaatcggtatgtgtctgtgttttgttttgataatgttgatgtatgaattactgacatgacacgataaggacactgacacg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13855426 gggagaagtttggaaaggttaaatcggtatgtgtctgtgttttgttttgataatgttgatgtatgaattactgacatgacacgatagggacactgacacg 13855525  T
Q  220 tagttatcgaggataattttaagtatacctatgaagaacggatatagacacccgttaccaaacacgacatggaaactgacacatcgacactactaataat 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13855526 tagttatcgaggataattttaagtatacctatgaagaacggatatagacacccgttactaaacacgacatggaaactgacacatcgacactactaataat 13855625  T
Q  320 ttgagaaaatgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcattgttacttaactataagctagatccaaaatttag 419  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13855626 ttgagaaaatgtaattatatgtgtcgatgtccgacacacctaacccgaggagtgttcgtacttcatagttacttaactataagctagatccaaaatttag 13855725  T
Q  420 aaccaaaacagaaagttatgctattgatgt 449  Q
    ||||||||||||||||||||| ||||||||    
T  13855726 aaccaaaacagaaagttatgccattgatgt 13855755  T

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Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 13849536 - 13849706
Alignment:
Q  20 attgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatccgagaacggaggtgatgaaggagtttttggaggatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  13849536 attgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcctagaacagaggtgatgaaggggtttttggaggatg 13849635  T
Q  120 gggagaagtttggaaaggttaaatcggtatgtgtctgtgtttt-gttttgataatgttgatgtatgaatta 189  Q
    | ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  13849636 gagagaagtttggcaaggttaaatcggtatgtgtttgtgttttggttttgataatgttgatgtatgaatta 13849706  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 329 - 449
Target Start/End: Original strand, 13851773 - 13851893
Alignment:
Q  329 tgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcattgttacttaactataagctagatccaaaatttagaaccaaaac 428  Q
    |||||||||||||||||||||| ||||| | ||||| ||||| |||   | |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  13851773 tgtaattatatgtgtcgatgtctgacacgcctaacctgaggaatgtctatgcttcatagttacttaactataagctagatccaaaattaagaaccaaaac 13851872  T
Q  429 agaaagttatgctattgatgt 449  Q
    ||||||||||||  |||||||    
T  13851873 agaaagttatgcctttgatgt 13851893  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 33303630 - 33303684
Alignment:
Q  276 accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaatg 330  Q
    |||| |||||| | ||| |||||||||||||||||| ||||||||||| ||||||    
T  33303630 accagacacgatacggacactgacacatcgacactaataataatttgaaaaaatg 33303684  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 13851711 - 13851760
Alignment:
Q  280 aacacgacatggaaactgacacatcgacactactaataatttgagaaaat 329  Q
    ||||||||| ||| |||||||| |||||||  ||||||||||||||||||    
T  13851711 aacacgacacggacactgacacgtcgacaccgctaataatttgagaaaat 13851760  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 9195820 - 9195788
Alignment:
Q  298 acacatcgacactactaataatttgagaaaatg 330  Q
    ||||||||||||| |||||||||||||||||||    
T  9195820 acacatcgacactcctaataatttgagaaaatg 9195788  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 34298407 - 34298460
Alignment:
Q  276 accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaat 329  Q
    |||| |||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  34298407 accagacacgacacggaaactgacacaccgacaccactaataatttgagaaaat 34298460  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 10572672 - 10572624
Alignment:
Q  281 acacgacatggaaactgacacatcgacactactaataatttgagaaaat 329  Q
    |||||||||| | ||||||||  |||||| |||||||||||||||||||    
T  10572672 acacgacatgaacactgacacgccgacaccactaataatttgagaaaat 10572624  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 34897122 - 34897178
Alignment:
Q  329 tgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcat 385  Q
    |||||||||||||||||||||| |||||| ||||  |||||||||| ||| ||||||    
T  34897122 tgtaattatatgtgtcgatgtcggacacatgtaattcgaggagtgtccgtgcttcat 34897178  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 378
Target Start/End: Original strand, 38143258 - 38143309
Alignment:
Q  327 aatgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgt 378  Q
    ||||||||||||||||| | |||| ||||||| ||| |||||||||||||||    
T  38143258 aatgtaattatatgtgttggtgtcagacacacctaatccgaggagtgttcgt 38143309  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 927909 - 927871
Alignment:
Q  292 aaactgacacatcgacactactaataatttgagaaaatg 330  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  927909 aaactgacacgtcgacactaataataatttgagaaaatg 927871  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 27945017 - 27945065
Alignment:
Q  281 acacgacatggaaactgacacatcgacactactaataatttgagaaaat 329  Q
    |||||||| ||| ||||||||  |||||| |||||||||||||||||||    
T  27945017 acacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 30516435 - 30516391
Alignment:
Q  286 acatggaaactgacacatcgacactactaataatttgagaaaatg 330  Q
    ||||||| |||||||| |||||||||  |||||||||||||||||    
T  30516435 acatggacactgacacgtcgacactaacaataatttgagaaaatg 30516391  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 22423896 - 22423847
Alignment:
Q  280 aacacgacatggaaactgacacatcgacactactaataatttgagaaaat 329  Q
    ||||||||| ||| ||||||||   |||||||||||||||||||||||||    
T  22423896 aacacgacacggatactgacaccctgacactactaataatttgagaaaat 22423847  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 43061745 - 43061708
Alignment:
Q  292 aaactgacacatcgacactactaataatttgagaaaat 329  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  43061745 aaactgaaacatcgacactagtaataatttgagaaaat 43061708  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 22440683 - 22440635
Alignment:
Q  281 acacgacatggaaactgacacatcgacactactaataatttgagaaaat 329  Q
    |||||||||||| ||||| ||||||||||   |||||||||||||||||    
T  22440683 acacgacatggacactgatacatcgacaccgttaataatttgagaaaat 22440635  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 12674589 - 12674536
Alignment:
Q  276 accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaat 329  Q
    |||| |||||||| ||| | ||||||| ||||||| ||||||||||||||||||    
T  12674589 accagacacgacacggacattgacacaccgacactgctaataatttgagaaaat 12674536  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 35335590 - 35335626
Alignment:
Q  294 actgacacatcgacactactaataatttgagaaaatg 330  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  35335590 actgacacatagacactagtaataatttgagaaaatg 35335626  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 8642 - 8682
Alignment:
Q  281 acacgacatggaaactgacacatcgacactactaataattt 321  Q
    |||||||||||| |||||||| |||||||| ||||||||||    
T  8642 acacgacatggacactgacacgtcgacacttctaataattt 8682  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 37497109 - 37497145
Alignment:
Q  294 actgacacatcgacactactaataatttgagaaaatg 330  Q
    |||||||||||||||||  ||||||||||||||||||    
T  37497109 actgacacatcgacactgataataatttgagaaaatg 37497145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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