View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_14 (Length: 461)
Name: NF10211_low_14
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Complemental strand, 36105889 - 36105462
Alignment:
| Q |
16 |
gacatcaggtgggtcccacgtagattgaaaacggagaatgggaaacggtggttatggagcctacaaaacaaacatgaattagcaaccgtcgctttcatgt |
115 |
Q |
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| T |
36105889 |
gacataaggtgggtcccaggtagatcgaaaacggagaatgggaaacggtggttatggagcctacaaaacaaacatgaattagtaaccgtcgctttcatgt |
36105790 |
T |
|
| Q |
116 |
ctttcattccgtcagttatgaaagttatgataacggtttctactcctagatttccaccgtaggatcttctgcacattcccacacccgatctcctcctccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
36105789 |
ctttcattccgtcagttatgaaagttatgataacggtttctactcctagatttccaccgtaggatcttctgcacattcccgcacccgatcccctcctccc |
36105690 |
T |
|
| Q |
216 |
tcttagtttctattttcactctcacacactcaccccaaccatcaaagaataagctcaaacacaatcgagaggtatatctcacacgacattgatacattga |
315 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
36105689 |
tcttagtttctattttcactctcacacactca-cccaaccatcaaagaataagctcaaacacaattgagaggtatatctaacacgacattgatacattga |
36105591 |
T |
|
| Q |
316 |
aatcgataaccacttcacttgtaacaatgtaattatatatgttatgtcggatactaacatatatgaacacatcaaacacacttttaactaaaattgtacc |
415 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36105590 |
aatcaataaccacttcacttgtaacaatgtaattatatatgttatgtcggatactaacatatatgaacacatcaaacatacttttaactaaaattgtacc |
36105491 |
T |
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| Q |
416 |
agctgtccagctctctcgaggcggtaata |
444 |
Q |
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|||| || ||||||||| ||||||||||| |
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| T |
36105490 |
agctttcgagctctctctaggcggtaata |
36105462 |
T |
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