View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_15 (Length: 429)
Name: NF10211_low_15
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_15 |
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| [»] scaffold0268 (1 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 15777989 - 15777892
Alignment:
| Q |
28 |
atgttataatgtcatgatttatttatgtcattttggataatattagcaccatatttatttaaatatgaagttatggcctaattattgcttgtatacaa |
125 |
Q |
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| T |
15777989 |
atgttataatgtcatgatttatttatgtcattttggaaaatattagcaccatatttatttaaatatcaagttatggcctgattattgcttgtatacaa |
15777892 |
T |
|
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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 22262628 - 22262726
Alignment:
| Q |
28 |
atgttataatgtcatgatttatttatgtcatttt-ggataatattagcaccatatttatttaaatatgaagttatggcctaattattgcttgtatacaa |
125 |
Q |
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|||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||||||| ||| ||||||| |||||||||| |
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| T |
22262628 |
atgttacaatgtcatgatttatttatgtaatttttggaaaatattagcaccatatttatttaaatatcaagttatgtcctgattattggttgtatacaa |
22262726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 22283060 - 22283121
Alignment:
| Q |
31 |
ttataatgtcatgatttatttatgtcattttggataatattagcaccatatttatttaaata |
92 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||| |||||| | |||||| |
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| T |
22283060 |
ttataaagtcatgatttatttatgtcattttggaaaatattagcacaatatttctataaata |
22283121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 29066874 - 29066935
Alignment:
| Q |
31 |
ttataatgtcatgatttatttatgtcattttggataatattagcaccatatttatttaaata |
92 |
Q |
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| T |
29066874 |
ttataatgtcatgatttatttatgtcattttggaaaatattagcaccatatttctataaata |
29066935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 24033147 - 24033072
Alignment:
| Q |
28 |
atgttataatgtcatgatttatttatgtcatttt-ggataatattagcaccatatttatttaaatatgaagttatg |
102 |
Q |
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|||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||||||| |
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| T |
24033147 |
atgttacaatgtcatgatttatttatgtaatttttggaaaatattagcaccatatttatttaaaaatcaagttatg |
24033072 |
T |
|
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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 13915986 - 13916047
Alignment:
| Q |
31 |
ttataatgtcatgatttatttatgtcattttggataatattagcaccatatttatttaaata |
92 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||| | |||||| |
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|
| T |
13915986 |
ttataatgtcatgatttattaatgtcattttggaaaatattagcaccatatttctataaata |
13916047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 17320915 - 17320856
Alignment:
| Q |
33 |
ataatgtcatgatttatttatgtcattttggataatattagcaccatatttatttaaata |
92 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||| |||||| | |||||| |
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| T |
17320915 |
ataaagtcatgatttatttatgtcattttggaaaatattagcacaatatttctataaata |
17320856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 8943 - 9010
Alignment:
| Q |
28 |
atgttataatgtcatgatttatttatgtcattttggataa-tattagcaccatatttatttaaatatg |
94 |
Q |
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|||||| ||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||| |
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| T |
8943 |
atgttacaatgtcatgatttatttatgtaatttttgaaaaatattagcaccatatttatttaaatatg |
9010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 84821 - 84871
Alignment:
| Q |
33 |
ataatgtcatgatttatttatgtcattttggataatattagcaccatattt |
83 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
84821 |
ataaagtcatgatttatttatgtcattttggaaaatattagcacaatattt |
84871 |
T |
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