View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10211_low_16 (Length: 422)

Name: NF10211_low_16
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10211_low_16
NF10211_low_16
[»] chr1 (7 HSPs)
chr1 (21-386)||(36526104-36526472)
chr1 (133-400)||(37923557-37923824)
chr1 (103-373)||(37871988-37872260)
chr1 (143-374)||(35051609-35051840)
chr1 (162-280)||(8237318-8237434)
chr1 (22-77)||(36533354-36533409)
chr1 (221-257)||(19023346-19023382)
[»] chr8 (1 HSPs)
chr8 (109-407)||(29468266-29468564)
[»] chr5 (5 HSPs)
chr5 (100-374)||(23269964-23270237)
chr5 (255-406)||(4430666-4430817)
chr5 (100-372)||(26917294-26917566)
chr5 (100-253)||(4431011-4431164)
chr5 (173-343)||(14964904-14965074)
[»] chr2 (9 HSPs)
chr2 (115-373)||(9252345-9252603)
chr2 (178-372)||(37490804-37490999)
chr2 (143-284)||(19920791-19920932)
chr2 (218-312)||(13018965-13019059)
chr2 (176-374)||(24588542-24588736)
chr2 (273-372)||(40728271-40728370)
chr2 (105-374)||(8295012-8295281)
chr2 (221-259)||(13923026-13923064)
chr2 (144-257)||(36359621-36359734)
[»] chr7 (3 HSPs)
chr7 (142-317)||(5460873-5461048)
chr7 (181-373)||(28283839-28284031)
chr7 (105-267)||(29443757-29443918)
[»] scaffold0305 (1 HSPs)
scaffold0305 (156-374)||(18603-18820)
[»] chr4 (6 HSPs)
chr4 (142-283)||(43000413-43000554)
chr4 (145-236)||(43381919-43382010)
chr4 (336-373)||(43381799-43381836)
chr4 (214-253)||(29135150-29135189)
chr4 (215-275)||(35762788-35762849)
chr4 (143-255)||(39079649-39079761)
[»] chr3 (8 HSPs)
chr3 (174-259)||(9738634-9738720)
chr3 (115-251)||(46107349-46107485)
chr3 (203-258)||(21330778-21330833)
chr3 (216-260)||(43059104-43059148)
chr3 (175-258)||(35529008-35529090)
chr3 (217-259)||(47798396-47798438)
chr3 (172-261)||(46016235-46016324)
chr3 (303-387)||(17571225-17571309)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 386
Target Start/End: Original strand, 36526104 - 36526472
Alignment:
Q  21 cataaaacagatagccccccaaagtggcatatgcattgcgacgttaatgaatgtgacatgagaatgatagnnnnnnnnn---gacagaaacaaacttaac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||            |||||||||||| |||||    
T  36526104 cataaaacagatagccccccaaagtggcatatgcattgcgacgttagtgaatgtgacatgagaatgatagtttttttttttggacagaaacaaatttaac 36526203  T
Q  118 tcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaac 217  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  36526204 tcatttcatttctaatggtagttgtaatacaagatgacatataatcatgaactcgggaactagcataagataatgacgcccgagctaacaagtgggcaac 36526303  T
Q  218 attatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36526304 attatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtg 36526403  T
Q  318 ctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctc 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36526404 ctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctc 36526472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 133 - 400
Target Start/End: Original strand, 37923557 - 37923824
Alignment:
Q  133 tagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtct 232  Q
    |||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  37923557 tagtagttttaatacaagatggcatataatcatgatcttgggaactagcataagataatgacgccctaactaacaagtgggcaacattatttgtttgtct 37923656  T
Q  233 cctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagag 332  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||| ||||| |||||||||||||||||||  ||||| |||    
T  37923657 cctaatgaaacttatcttaaagttttgatgattcataagtgaaactttgcaagtattcagaattgcgccgaacatggaattggtgctgagattgcttgag 37923756  T
Q  333 atgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctcatagtaccaagcca 400  Q
    ||||| |||||||||||||||||||||||||| |||||||||   | ||||||||  |||||||||||    
T  37923757 atgccatcaaccacttgcttgcaatcaagttctatagacaccgaaggaaacctcaaggtaccaagcca 37923824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 103 - 373
Target Start/End: Complemental strand, 37872260 - 37871988
Alignment:
Q  103 agaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcat---gaactcgggaactagcataagataatgacgccct 199  Q
    ||||||| ||| |||||||||||||  ||| |   || |||||||||||||||||||||||||   |||||  ||||||| |||||||||| |   | ||    
T  37872260 agaaacatactcaactcatttcattaataacaacggtcgtaatacaagatggcatataatcatcatgaactttggaactaccataagataacgcaactct 37872161  T
Q  200 agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcg 299  Q
       ||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| |||||||  | | |||||  |     
T  37872160 gactaataagtgggaaacattatttgtttgtctcctaataaaacttatcttaaagttttgattattcagaagtgaagctttgcaaccaatcagaat-acc 37872062  T
Q  300 ccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacac 373  Q
     | | |||||||||| || |||  |||||||||||| ||| |||||||||||| ||||||| |||||| |||||    
T  37872061 acgagcatggaattgatgttgagattgctagagatgtcgtaaaccacttgcttacaatcaatttcgatggacac 37871988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 374
Target Start/End: Original strand, 35051609 - 35051840
Alignment:
Q  143 aatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaa 242  Q
    |||||||||||| |||| |||| |||   |||||||||||||| ||||||||| | | | |||||| ||| ||| |||||||  |||||| |||||||||    
T  35051609 aatacaagatggaatattatcaagaatgtgggaactagcataaaataatgacgtcattgctaacaaatggccaatattattttcttgtcttctaatgaaa 35051708  T
Q  243 cttatcttaaagttttgat-gattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtca 341  Q
    ||| ||||||||||||| | | ||| ||| ||||||||| ||| |||  | ||| ||| ||||| || |||||||| |||   | ||||  |||  ||||    
T  35051709 cttttcttaaagttttggtaggttc-taactgaagtttttcaaatatcaataattgcgtcaaacttgaaattggtgttgagtctcctagttatgttgtca 35051807  T
Q  342 accacttgcttgcaatcaagttcgatagacacc 374  Q
    |||||||||||| ||||||||| ||||||||||    
T  35051808 accacttgcttgtaatcaagtttgatagacacc 35051840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 8237434 - 8237318
Alignment:
Q  162 tcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat 261  Q
    ||||||||  |||||| | ||||||||| || || ||||| |||||||| ||||| |||||||| |||||  |||||||||||||||||||| ||||| |    
T  8237434 tcatgaacatgggaaccaacataagatattgtcgtcctagctaacaagtcggcaatattatttgcttgtc--ctaatgaaacttatcttaaaattttggt 8237337  T
Q  262 gattcataagtgaagtttt 280  Q
     | |  |||||||||||||    
T  8237336 aaattctaagtgaagtttt 8237318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 36533354 - 36533409
Alignment:
Q  22 ataaaacagatagccccccaaagtggcatatgcattgcgacgttaatgaatgtgac 77  Q
    ||||||||||||| ||||| ||||||||| | |||||| |||||| ||||||||||    
T  36533354 ataaaacagataggcccccgaagtggcatctacattgcaacgttagtgaatgtgac 36533409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 19023346 - 19023382
Alignment:
Q  221 atttgtttgtctcctaatgaaacttatcttaaagttt 257  Q
    |||||||||||||||||  ||||||||||||||||||    
T  19023346 atttgtttgtctcctaacaaaacttatcttaaagttt 19023382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 109 - 407
Target Start/End: Original strand, 29468266 - 29468564
Alignment:
Q  109 aaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaa 208  Q
    ||||| |||||||||||||  |||||||||||||||||||||||| ||| |||||||||||| | |||||||||||| ||||||||  ||||| ||||||    
T  29468266 aaactcaactcatttcattaataatagtagttgtaatacaagatgacatgtaatcatgaacttgagaactagcataacataatgacatcctagctaacaa 29468365  T
Q  209 gtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatg 308  Q
    ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || || ||||| ||||||    
T  29468366 gtatgcaacattatttgtttgtctcataatgaaacttatcttaaagttttgatgattcataagtgaagctttgcaaatattcaggattgcgccgaacatg 29468465  T
Q  309 gaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctcatagtaccaagccacattatt 407  Q
    ||  ||||||| ||||||||||||||||  ||||| |||||||||||||||||||||||||| |||   | |||||||| ||||||||||||| |||||    
T  29468466 gacctggtgctaaagttgctagagatgcaatcaactacttgcttgcaatcaagttcgatagataccgaaggaaacctcaaagtaccaagccactttatt 29468564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 100 - 374
Target Start/End: Complemental strand, 23270237 - 23269964
Alignment:
Q  100 gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccct 199  Q
    |||||||||||| |||| |||||||| |  |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  23270237 gacagaaacaaagttaattcatttcactattaatagcatttgtaatacaagatggcatataatcatgaacttgggaactagcataagataatgactccct 23270138  T
Q  200 agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcg 299  Q
    || ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| |||    
T  23270137 agctaacaagtgagcaacattatttgcttgtcttctaatgaaacttatcttaaagttttgatgattcataagtgaagctttgcaagtgttcagaatagcg 23270038  T
Q  300 ccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacacc 374  Q
     | ||| |||| |||||| |||  |||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  23270037 tcgaacgtggatttggtgttgagattgctagagatgtcgtcaacca-ttgcttgcaatcaagttcgatagacacc 23269964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 255 - 406
Target Start/End: Complemental strand, 4430817 - 4430666
Alignment:
Q  255 ttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgc 354  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||    
T  4430817 ttttgatgattcacaagtgaagttttgcaagtattcataatcgcgccaaacatgaaattggtgctgaagttgctagaaatgccgtcaaccacttacttgc 4430718  T
Q  355 aatcaagttcgatagacaccctggaaaacctcatagtaccaagccacattat 406  Q
    |||  ||||||||||||||  || ||| |||||||||| ||||||| |||||    
T  4430717 aattcagttcgatagacactttgaaaatcctcatagtatcaagccatattat 4430666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 100 - 372
Target Start/End: Complemental strand, 26917566 - 26917294
Alignment:
Q  100 gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccct 199  Q
    |||| |||||||||||||||||||||||  |||||  |||   ||| ||||||||||||| |||||||||  ||| || |||||||||||||||||||||    
T  26917566 gacaaaaacaaacttaactcatttcattaataataacagtctcaatgcaagatggcatatgatcatgaacatggggacaagcataagataatgacgccct 26917467  T
Q  200 agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaag-ttttgatgattcataagtgaagttttgcaagtattgagaatcgc 298  Q
     | ||  |  ||||||||| |||||| |||||||||||| ||||||||||||||| |||||  ||||| ||||||||| ||||||| |||  ||||| ||    
T  26917466 tgctagtagatgggcaacactatttgcttgtctcctaataaaacttatcttaaagtttttgtagattc-taagtgaagctttgcaaatatcaagaatagc 26917368  T
Q  299 gccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagaca 372  Q
    | ||||||| |||||| || |||     ||||  ||||||||||||||||||||||||||||||||||||||||    
T  26917367 gtcaaacattgaattgttgttgagtcccctagctatgccgtcaaccacttgcttgcaatcaagttcgatagaca 26917294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 100 - 253
Target Start/End: Complemental strand, 4431164 - 4431011
Alignment:
Q  100 gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccct 199  Q
    |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||  || |||||| | | ||| ||||||||||||||  ||||||    
T  4431164 gacagaaacaaacttaactcatttcaattctaataataattgtaatacaagatggcatgcaaccatgaatttgagaattagcataagataattccgccct 4431065  T
Q  200 agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaa 253  Q
    || ||||||||||| ||||||||||| || ||||||||| ||||||||||||||    
T  4431064 agctaacaagtgggaaacattatttgcttctctcctaataaaacttatcttaaa 4431011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 173 - 343
Target Start/End: Complemental strand, 14965074 - 14964904
Alignment:
Q  173 ggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagt 272  Q
    |||||||| ||||||||||| |||||||  ||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| |    
T  14965074 ggaactagtataagataatggcgccctaactaataagtgggcaacattatttgattgtctcttgatgaaacttatcttaaagttttgatgattcataaat 14964975  T
Q  273 gaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaac 343  Q
     || |||||||||| || | |||| ||   || ||  ||||||||||||| ||| |||||||| |||||||    
T  14964974 taaattttgcaagtgtttaaaatctcgttgaatataaaattggtgctgaaattgttagagatgtcgtcaac 14964904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 115 - 373
Target Start/End: Complemental strand, 9252603 - 9252345
Alignment:
Q  115 aactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggc 214  Q
    |||||||||||| | ||| |  ||| |||||| |||||| ||||||||||| |||  | ||||||| |||||||||| ||| ||  | |||||| ||||     
T  9252603 aactcatttcatatataacaacagtcgtaatataagatgacatataatcattaacatgagaactaggataagataataacgtccaggctaacaaatgggt 9252504  T
Q  215 aacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattg 314  Q
    ||||||||| ||||||||  ||||||||||||| ||||||||||||||||||| |||||||| ||||| |  ||| ||||| ||||  |||||| |||||    
T  9252503 aacattattcgtttgtcttttaatgaaacttatgttaaagttttgatgattcaaaagtgaagctttgccaccattcagaatagcgctgaacatgaaattg 9252404  T
Q  315 gtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacac 373  Q
    ||||| |  ||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  9252403 gtgcttagattgctagagatgccgtcaaccacttgcttacaatcaagtttgatagacac 9252345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 178 - 372
Target Start/End: Complemental strand, 37490999 - 37490804
Alignment:
Q  178 tagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagt 277  Q
    |||||| ||||||||||| ||||| |||||||||| |||||||||||  |||||| |||||||||||||||| |||||||||||||||||  |||||||     
T  37490999 tagcatgagataatgacgtcctagctaacaagtggacaacattatttacttgtcttctaatgaaacttatctgaaagttttgatgattcagtagtgaagc 37490900  T
Q  278 tttgcaagtattgagaatcgcgccaa-acatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagaca 372  Q
    |||||||  ||| | |||   | ||| ||||| |||||||  |||  |||||||||||| ||||||| | |||||| |||||||||| ||||||||    
T  37490899 tttgcaatcattcaaaataatgtcaacacatgaaattggtattgagattgctagagatgtcgtcaacgatttgcttacaatcaagtttgatagaca 37490804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 143 - 284
Target Start/End: Complemental strand, 19920932 - 19920791
Alignment:
Q  143 aatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaa 242  Q
    ||||||||||||||||||||||||||   ||||||| | |||||||||||||| ||| | |||||| |||  |||| |||||| |||| |||||||||||    
T  19920932 aatacaagatggcatataatcatgaatgtgggaactggtataagataatgacgtccttgctaacaaatggcaaacactatttgcttgtttcctaatgaaa 19920833  T
Q  243 cttatcttaaagttttgat-gattcataagtgaagttttgcaa 284  Q
    | || |||||||||||||| ||||| ||||||| |||||||||    
T  19920832 cctagcttaaagttttgatagattc-taagtgatgttttgcaa 19920791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 13018965 - 13019059
Alignment:
Q  218 attatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaat 312  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||| | |||||| |||  ||  ||| ||||| ||||||||||||||||    
T  13018965 attatttgattgtctcctaatgaaacttatcttaaaattttgatgattcagatgtgaagctttataaccattaagaatagcgccaaacatggaat 13019059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 374
Target Start/End: Original strand, 24588542 - 24588736
Alignment:
Q  176 actagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataagtga 274  Q
    ||||||||||||||||||||||||   ||   | ||||||||| |||||| |||| | ||||| |||||||     |||||||| | ||||| |||||||    
T  24588542 actagcataagataatgacgccctttctagtgaatgggcaacactatttgattgtgttctaataaaacttac----aagttttgttagattc-taagtga 24588636  T
Q  275 agttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacacc 374  Q
    || ||| ||| |||  ||||| ||||||||||||||||||||| |||     ||||  ||| ||||||||||||||||||||||||||||||||||||||    
T  24588637 agctttacaaatatcaagaatagcgccaaacatggaattggtgttgagtcccctagttatgtcgtcaaccacttgcttgcaatcaagttcgatagacacc 24588736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 372
Target Start/End: Original strand, 40728271 - 40728370
Alignment:
Q  273 gaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagaca 372  Q
    ||||||||||| || || || |||||| | | || |||  ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||    
T  40728271 gaagttttgcaggtgtttaggatcgcgtcgagcacggatatggtgctgaagttgctagagatgtcgtcaaatacttgcttgcaatcaagttcgatagaca 40728370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 374
Target Start/End: Complemental strand, 8295281 - 8295012
Alignment:
Q  105 aaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagata 204  Q
    |||||||||||||||||||||||  |||||| | |   |||||||||||| ||||  ||||||||   |  | || ||||||||||||||    | | ||    
T  8295281 aaacaaacttaactcatttcattattaatagcaatctcaatacaagatggtatatgttcatgaacgtagagattaacataagataatgacaaatttgtta 8295182  T
Q  205 acaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataagtgaagttttgcaagtattgagaatcgcgccaa 303  Q
     ||| || |||||| ||||| |||||||| |||| ||||||||||||||||||||   ||||| ||||||||| ||||||| |||  ||||   ||||||    
T  8295181 gcaaatgagcaacactatttatttgtctcttaataaaacttatcttaaagttttggcagattc-taagtgaagctttgcaaatatcaagaacaacgccaa 8295083  T
Q  304 acatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacacc 374  Q
    ||||| ||||| || |||     | ||  ||||||| || |||||||||||||||||||||||||||||||    
T  8295082 acatgaaattgatgttgagtccccaagctatgccgtaaatcacttgcttgcaatcaagttcgatagacacc 8295012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 13923064 - 13923026
Alignment:
Q  221 atttgtttgtctcctaatgaaacttatcttaaagttttg 259  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  13923064 atttgcttgtttcctaatgaaacttatcttaaagttttg 13923026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 257
Target Start/End: Complemental strand, 36359734 - 36359621
Alignment:
Q  144 atacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaac 243  Q
    |||||||||||||||| |||||||  | | || |||||||| || ||||| ||||| | |||||| |  || ||||| |||| |||||  || || ||||    
T  36359734 atacaagatggcatatgatcatgacattgagacctagcatatgacaatgaagcccttgctaacaaattagccacattgtttgcttgtcgtctgataaaac 36359635  T
Q  244 ttatcttaaagttt 257  Q
    ||||||||||||||    
T  36359634 ttatcttaaagttt 36359621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 142 - 317
Target Start/End: Complemental strand, 5461048 - 5460873
Alignment:
Q  142 taatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaa 241  Q
    |||||||||||||||||| |||||||| | | | |||||||||||||||||| |  |||| ||||||||  |||||| |||||| |||||||||||||||    
T  5461048 taatacaagatggcatatgatcatgaatttgaggactagcataagataatgatgttctagctaacaagtcagcaacaatatttgcttgtctcctaatgaa 5460949  T
Q  242 acttatcttaaagttttgat-gattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtg 317  Q
    |||||||||||||||||| |  ||||  ||| |||| ||||||||| |  ||||| ||||| |||||||||||||||    
T  5460948 acttatcttaaagttttggtaaattctcaag-gaagctttgcaagtctctagaatagcgccgaacatggaattggtg 5460873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 373
Target Start/End: Complemental strand, 28284031 - 28283839
Alignment:
Q  181 cataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagtttt 280  Q
    |||||||||||||| ||||   |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||     
T  28284031 cataagataatgacaccctgactaacaagtgaacatcattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcagaagtgaagctta 28283932  T
Q  281 gcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacac 373  Q
    |||   ||| ||||| | |   ||||| ||||  ||| |||  |||||||||||| | |||  ||||||||| | ||||||||| ||||||||    
T  28283931 gcagccattcagaatagtgttgaacatagaatcagtgttgagattgctagagatgtcatcaggcacttgcttacgatcaagttcaatagacac 28283839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 267
Target Start/End: Complemental strand, 29443918 - 29443757
Alignment:
Q  105 aaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagata 204  Q
    ||||||||| |||||||||||||  ||| |||| | ||||||||| ||| |||||||||||||||  | |||| | ||||||||||| | ||||| | ||    
T  29443918 aaacaaactcaactcatttcattaataacagtaatcgtaatacaatatgacatataatcatgaacatgagaacaaacataagataataatgcccttgcta 29443819  T
Q  205 acaagtgggcaacattatttgtttgtctcctaatg-aaacttatcttaaagttttgatgattca 267  Q
    |||||||  |||  ||||||| ||||||   |||| ||||||||||||||||||||||||||||    
T  29443818 acaagtgaacaaatttatttgcttgtct--aaatgaaaacttatcttaaagttttgatgattca 29443757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 156 - 374
Target Start/End: Original strand, 18603 - 18820
Alignment:
Q  156 atataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagt 255  Q
    |||||||||||||||  ||| ||||||| || |||||||  | | | |||||||||||||| ||||||| ||| | || ||||||||||| |||| || |    
T  18603 atataatcatgaactttggagctagcatgaggtaatgacaacttggctaacaagtgggcaaaattatttctttttttcttaatgaaacttgtcttcaaat 18702  T
Q  256 tttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgca 355  Q
    |||||||||||| |||||||| |||||||  ||| | ||| ||   |||| ||||||||||| |||  || ||||| ||| ||||||||||||| || ||    
T  18703 tttgatgattcagaagtgaagctttgcaaccattcaaaatagc-ataaacgtggaattggtgttgagatttctagatatgtcgtcaaccacttgtttaca 18801  T
Q  356 atcaagttcgatagacacc 374  Q
    ||||||||| |||||||||    
T  18802 atcaagttcaatagacacc 18820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 142 - 283
Target Start/End: Original strand, 43000413 - 43000554
Alignment:
Q  142 taatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaa 241  Q
    |||| ||||||| |||||||||||||||| || || ||||||||||||||||| || |||  ||||| || | || ||| |||| |||||||||||| ||    
T  43000413 taatgcaagatgacatataatcatgaacttggaaattagcataagataatgacaccttagcaaacaaatgagtaatattgtttgcttgtctcctaataaa 43000512  T
Q  242 acttatcttaaagttttgatgattcataagtgaagttttgca 283  Q
    |||||| |||||||||||||  ||  ||||||||| ||||||    
T  43000513 acttatattaaagttttgattttttttaagtgaagctttgca 43000554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 43382010 - 43381919
Alignment:
Q  145 tacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctccta 236  Q
    |||||||| | |||| ||||||||   || ||||||||||||||||||||| ||| | |||||| || |||||| |||||||||||||||||    
T  43382010 tacaagatagaatatgatcatgaatgtggaaactagcataagataatgacgtccttgttaacaaatgagcaacactatttgtttgtctccta 43381919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 43381836 - 43381799
Alignment:
Q  336 ccgtcaaccacttgcttgcaatcaagttcgatagacac 373  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43381836 ccgtcaaccacttgcttgcaatcaagttcgatagacac 43381799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 29135189 - 29135150
Alignment:
Q  214 caacattatttgtttgtctcctaatgaaacttatcttaaa 253  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  29135189 caacattatttatttgtctcctaacgaaacttatcttaaa 29135150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 35762849 - 35762788
Alignment:
Q  215 aacattatttgtttgtctcctaatgaaactta-tcttaaagttttgatgattcataagtgaa 275  Q
    ||||||||||||||||| | |||| ||| ||| | ||||||||||||||||||| |||||||    
T  35762849 aacattatttgtttgtcccataataaaatttaatattaaagttttgatgattcacaagtgaa 35762788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 255
Target Start/End: Complemental strand, 39079761 - 39079649
Alignment:
Q  143 aatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaa 242  Q
    |||||||||| | |||| |||||||| | |  ||||||||||||||||||||   |||| |||||| ||  | ||||||||| ||| ||   |||| |||    
T  39079761 aatacaagatagtatatgatcatgaatttgaaaactagcataagataatgactttctagctaacaaatgaacgacattatttatttttcgtgtaataaaa 39079662  T
Q  243 cttatcttaaagt 255  Q
    |||||||||||||    
T  39079661 cttatcttaaagt 39079649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 9738634 - 9738720
Alignment:
Q  174 gaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatg-aaacttatcttaaagttttg 259  Q
    |||||| |||||||||||||||| |||| |||||| || ||||||||||||| ||||| ||||||| |||  |||||||||||||||    
T  9738634 gaactaacataagataatgacgctctagctaacaaatgagcaacattatttggttgtcacctaatgaaaaaatatcttaaagttttg 9738720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 251
Target Start/End: Complemental strand, 46107485 - 46107349
Alignment:
Q  115 aactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggc 214  Q
    |||||||||||||  |||||   || || ||||||| |||||||| ||  |||| |  ||||||| ||||| |||||||||| |||| |||||| || ||    
T  46107485 aactcatttcattagtaataactgtcgtgatacaagttggcatatgattgtgaatttaggaactaacataatataatgacgctctagctaacaaatgagc 46107386  T
Q  215 aacattatttgtttgtctcctaatgaaacttatctta 251  Q
    ||||||||||  ||||| ||||||||||| |||||||    
T  46107385 aacattatttacttgtcacctaatgaaacgtatctta 46107349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 21330778 - 21330833
Alignment:
Q  203 taacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagtttt 258  Q
    |||||| || |||||||||||| ||||||||| ||| |||||||||||||||||||    
T  21330778 taacaaatgagcaacattatttatttgtctccgaataaaacttatcttaaagtttt 21330833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 43059148 - 43059104
Alignment:
Q  216 acattatttgtttgtctcctaatgaaacttatcttaaagttttga 260  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||    
T  43059148 acattatttgtttgtcttataatgaaacttatcttaaaattttga 43059104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 35529008 - 35529090
Alignment:
Q  175 aactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagtttt 258  Q
    ||||| ||||||||||||||   |||| |||||| || ||||||| ||||||||||| | ||||||||||||| ||||| ||||    
T  35529008 aactaacataagataatgacattctagctaacaa-tgagcaacatcatttgtttgtcgcttaatgaaacttattttaaaatttt 35529090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 47798396 - 47798438
Alignment:
Q  217 cattatttgtttgtctcctaatgaaacttatcttaaagttttg 259  Q
    |||||||| |||||||| |||| ||||||||||||||||||||    
T  47798396 cattatttatttgtctcttaataaaacttatcttaaagttttg 47798438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 261
Target Start/End: Original strand, 46016235 - 46016324
Alignment:
Q  172 gggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat 261  Q
    |||||| | ||||||||||||| || |||  |||||| || |||||||| |||| |||||  | |||||||||||| ||| |||||||||    
T  46016235 gggaacaaacataagataatgatgctctaactaacaaatgagcaacattgtttgattgtcctcaaatgaaacttatattatagttttgat 46016324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 17571309 - 17571225
Alignment:
Q  303 aacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctca 387  Q
    |||||| |||||||| |||  |||||||||||| |||||||||| | ||| || | |||||||||||| |||   ||||||||||    
T  17571309 aacatgtaattggtgttgagattgctagagatgtcgtcaaccacatacttacagttaagttcgatagagaccgaagaaaacctca 17571225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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