View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_17 (Length: 422)
Name: NF10211_low_17
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 5300768 - 5301157
Alignment:
| Q |
18 |
aataacaactacatctgtctcagttgcaactggatcaggaacaactaccactggcatggagttcatgtcgagttctagtgacttgggctgaacttcggca |
117 |
Q |
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| T |
5300768 |
aataacaactacatctgtctcagttgcaactggatcaggaacaactaccactggcatggagttcatgtcgacttctagtgacttgggctgaacttcggca |
5300867 |
T |
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| Q |
118 |
ccaacatcatttgtaatctcctcccaaaatgtcattgatgagtcgagcagatccaattgttccaagtttaatgatagacgagacacactcgggtcgtttt |
217 |
Q |
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| T |
5300868 |
ccaacatcatttgtaatctcctcccaaaatgtcattgatgagtcgagcagatccaattgttccaagtttaatgatagacgagacacacccgggtcgtttt |
5300967 |
T |
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| Q |
218 |
ccttgtgtattacatgagaagttcccacatgatcttcagtgctagctacataacaaaaaggattgtttctcggaatcctcctttttcgctcctttttccc |
317 |
Q |
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| T |
5300968 |
ctttgtgtattacatgagaagttcccacatgatcttcagtgctagctacataacaaaaaggattgtttctcggaatcttccttttttgctcctttttccc |
5301067 |
T |
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| Q |
318 |
aggtttcttcagcacttgatcaacagaagagagcacactttgatgtttcttttccaaagtttccaaatgacccttcatgtactgtgatgt |
407 |
Q |
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| T |
5301068 |
aggtttcttcagcacttgaccaacagaagagagcacactttgatgtttcttttccaaagtttccaaatgacccttcatgtactgtgatgt |
5301157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 15621168 - 15621096
Alignment:
| Q |
232 |
tgagaagttcccacatgatcttcagtgctagctacataacaaaaaggattgtttctcggaatcctcctttttc |
304 |
Q |
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|||||||||| |||||||||||| || | ||||||| | ||||| |||| ||||| ||||||||||||||| |
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| T |
15621168 |
tgagaagttcaaacatgatcttcaatgattgctacattataaaaatgattctttctttgaatcctcctttttc |
15621096 |
T |
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