View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10211_low_19 (Length: 418)

Name: NF10211_low_19
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10211_low_19
NF10211_low_19
[»] chr5 (1 HSPs)
chr5 (19-400)||(12511568-12511950)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 12511568 - 12511950
Alignment:
Q  19 cagatcatatgataagacacgtgagagagtgtgtttctttgtttttgtgatgattttaaaata---tatacatggnnnnnnnnttatgtggaggtttcta 115  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||   |||||||||        |||||||||||||||||    
T  12511568 cagatcatatgataagacacgtgagag--tgtgtttctttgtttttgtgatgattttaaaataatatatacatggaaaaaaaattatgtggaggtttcta 12511665  T
Q  116 ttctttaggagtttagagggttttgctaactagcaataaaggaaaagtttcttttaaaaatataattcttttccactaacttaaaatttaaataaccatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  12511666 ttctttaggagtttagagggttttgctaactagcaataaaggaaaagtttcttttaaaaatataattcttttccactgacttaaaatttaaataaccact 12511765  T
Q  216 tgannnnnnnattagcgcttagttttacgtgatctaaataatttataatatttcttatctttcacatatctcattgaagagtattacgagccgtcttgac 315  Q
    |||       |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  12511766 tgatttttttattaacgcttagttttacgtgatctaaataatttataatatttcttgtctttcacatatctcattaaagagtattacgagccgttttgac 12511865  T
Q  316 cgtactttgatgttaggtgtaggatgtgtatgttgttgtaagttagtggaccctttctatggatgtctcgtactattaccctttg 400  Q
    || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12511866 cgcactttaatgtcaggtgtaggatgtgtatgttgttgtaagttagtggaccctttctatggatgtctcgtactattaccctttg 12511950  T

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