View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10211_low_2 (Length: 734)
Name: NF10211_low_2
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 633; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 7 - 718
Target Start/End: Complemental strand, 14788809 - 14788099
Alignment:
| Q |
7 |
aaaatttcatcagcatgaacaagcacaacatttgattgagaaatgctatcaaaattgaagttttgggtattatttgaggtgctatctccatagaaactat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788809 |
aaaatttcatcagcatgaacaagcacaacatttgattgagaaatgctatcaaaattgaagttttgggtattatttgaggtgctatctccatagaaactat |
14788710 |
T |
|
| Q |
107 |
taaaagagtctctatgaggctcatcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaactatcactagcaagaggcaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788709 |
taaaagagtctctatgaggctcatcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaactatcactagcaagaggcaa |
14788610 |
T |
|
| Q |
207 |
tgatgtttccattttaaaatgtttattgcaacagatgtgttgtgtgaattaatataaaaaacgtgtataccaataaggacaaagtttatttgaagcaaca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788609 |
tgatgtttccattttaaaatgtttattgcaacagatgtgttgtgtgaattaatataaaaaacgtgtataccaataaggacaaagtttatttgaagcaaca |
14788510 |
T |
|
| Q |
307 |
atgaaagaataatattagaaaatagactcatgctaacaagtgcttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatt |
406 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14788509 |
atgaaaaaataatattagaaaatagactcatgctaacaagtgcttgttatgaaggtaaaaaaggaaataagtgatatattataagtaaaaaatgtcaatt |
14788410 |
T |
|
| Q |
407 |
tctaaagttgtaaggtgtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaaccta |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788409 |
tctaaagttgtaaggtgtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaaccta |
14788310 |
T |
|
| Q |
507 |
gatactnnnnnnnnnnntttgatacactaatattccatgaagcatggacaccttcaaaattaatcgtgtcttcatgtctgacatctgtatgatactcgta |
606 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14788309 |
gatact-aaaaaaaaaatttgatacactaatattcaatgaagcatggacaccttcaaaattaatcgtgttttcatgtctgacatctgtatgatactcgta |
14788211 |
T |
|
| Q |
607 |
caatacgtgtcaccgtctgacaacccaaacaaaggtnnnnnnncaattatttctttgcttcgacacaatttaggcatgtttaaaaaacatctacattggt |
706 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788210 |
caatacgtgtcaccgtctaacaacccaaacaaaggtaaaaaaacaattatttctttgcttcgacacaatttaggcatgtttaaaaaacatctacattggt |
14788111 |
T |
|
| Q |
707 |
aataaaagatgt |
718 |
Q |
| |
|
|||||||||||| |
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|
| T |
14788110 |
aataaaagatgt |
14788099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 423 - 718
Target Start/End: Complemental strand, 15229430 - 15229136
Alignment:
| Q |
423 |
gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatactnnnnnnnnnn |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15229430 |
gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatactaaaaaaaaaa |
15229331 |
T |
|
| Q |
523 |
ntttgatacactaatattccatgaagcatggacaccttcaaaattaatcgtgtcttcatgtctgacatctgtatgatactcgtacaatacgtgtcaccgt |
622 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15229330 |
-tttgatacactaatattcaatgaagcatggacaccttcaaaattaatcgtgttttcatgtctgacatctgtatgatactcgtacaatacgtgtcaccgt |
15229232 |
T |
|
| Q |
623 |
ctgacaacccaaacaaaggtnnnnnnncaattatttctttgcttcgacacaatttaggcatgtttaaaaaacatctacattggtaataaaagatgt |
718 |
Q |
| |
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|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15229231 |
ctaacaacccaaacaaaggtaaaaaaacaattatttctttgcttcgacacaatttaggcatgtttaaaaaacatctacattggtaataaaagatgt |
15229136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 423 - 718
Target Start/End: Complemental strand, 15239555 - 15239264
Alignment:
| Q |
423 |
gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatactnnnnnnnnnn |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15239555 |
gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact-aaaaataaa |
15239457 |
T |
|
| Q |
523 |
ntttgatacactaatattccatgaagcatggacaccttcaaaattaatcgtgtcttcatgtctgacatctgtatgatactcgtacaatacgtgtcaccgt |
622 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||||| || |
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|
| T |
15239456 |
atttgatacattaatattgaatgaagcatggacacctccaaaattaatcgtgtctccatgtccgacatttgtatgatactcgtacaacacgtgtcactgt |
15239357 |
T |
|
| Q |
623 |
ctgacaacccaaacaaaggtnnnnnnncaattatttctttgcttcgacacaatttaggcatgtttaaaaaacatctacattggtaataaaagatgt |
718 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15239356 |
ctcacaacccaaacaaaggtaaaaa---aattatttcttcgcttcgacacaatttaggcatgttttaaaaacatctacattggtaataaaagatgt |
15239264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 7 - 327
Target Start/End: Original strand, 17543738 - 17544057
Alignment:
| Q |
7 |
aaaatttcatcagcatgaacaagcacaacatttgattgagaaatgctatcaaaattgaagttttgggtattatttgaggtgctatctccatagaaactat |
106 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17543738 |
aaaatttcatcagcatgaacaagcacagcatttgattgagaaatgctatcaaaattgaagttttgggtattatttgaggtgctatctccatagaaactat |
17543837 |
T |
|
| Q |
107 |
taaaagagtctctatgaggctcatcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaactatcactagcaagaggcaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17543838 |
taaaagagtctctatgaggctcatcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaactatcactagcaagaggcaa |
17543937 |
T |
|
| Q |
207 |
tgatgtttccattttaaaatgtttattgcaacagatgtgttgtgtgaattaatataaaaaacgtgtataccaataaggacaaagtttatttgaagcaaca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
17543938 |
tgatgtttccattttaaaatgtttattgcaacagatgtgttgtgtgaattaatat-aaaaatgtgtataccaataaggacaaagtttatttgaagcaaca |
17544036 |
T |
|
| Q |
307 |
atgaaagaataatattagaaa |
327 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
17544037 |
atgaaagaataatattagaaa |
17544057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 319 - 718
Target Start/End: Original strand, 17544475 - 17544870
Alignment:
| Q |
319 |
tattagaaaatagactcatgctaacaagtgcttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgta |
418 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17544475 |
tattagaacatagactcatgctaacaagtgcttgttatgaaggtaaaaaaggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgta |
17544574 |
T |
|
| Q |
419 |
aggtgtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatactnnnnnn |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17544575 |
aggtgtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact-aaaaa |
17544673 |
T |
|
| Q |
519 |
nnnnntttgatacactaatattccatgaagcatggacaccttcaaaattaatcgtgtcttcatgtctgacatctgtatgatactcgtacaatacgtgtca |
618 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||||||| |||||||| |
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|
| T |
17544674 |
taaaatttgatacattaatattgaatgaagcatggacacctccaaaattaatcgtgtctccatgtccgacatttgtatgatactcgtacaacacgtgtca |
17544773 |
T |
|
| Q |
619 |
ccgtctgacaacccaaacaaaggtnnnnnnncaattatttctttgcttcgacacaatttaggcatgtttaaaaaacatctacattggtaataaaagatgt |
718 |
Q |
| |
|
| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
17544774 |
ctgtctcacaacccaaacaaaggtaaaaa---aattatttcttcgcttcgacacaatttaggcatgttttaaaaacatctacattggtaataaaagatgt |
17544870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 415
Target Start/End: Complemental strand, 9045229 - 9045163
Alignment:
| Q |
349 |
cttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagtt |
415 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| ||| |||||||||| || ||||||||||||| |
|
|
| T |
9045229 |
cttgttaagaaggtaaaaatagaaataagtgataaatttaaagtaaaaaaagttaatttctaaagtt |
9045163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 35507145 - 35507203
Alignment:
| Q |
357 |
gaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagtt |
415 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| | |||||||| ||||||||||| |||| |
|
|
| T |
35507145 |
gaagctaaaaatggaaataagtgataaattcaaggtaaaaaaagtcaatttctagagtt |
35507203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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