View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_20 (Length: 417)
Name: NF10211_low_20
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 2 - 398
Target Start/End: Original strand, 43186125 - 43186521
Alignment:
| Q |
2 |
gacactagtcttaagagaatgtattttgcattgtttagctaaccaatattacaaattatcactaattaaaaaatacaccaagtacatagattgcattaaa |
101 |
Q |
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| T |
43186125 |
gacactagtcataagagaatgtattttgcattgtttagctaaccaatattacaaattatcactaattaaaaaatacaccaagtacatagattgcattaaa |
43186224 |
T |
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| Q |
102 |
ctattttaaaacaaacttaaagtgacagttcctttctagcccttgatcttaatcatggctgttataattgctacacctttctgtaagccaaaaggttgtg |
201 |
Q |
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| T |
43186225 |
ctattttaaaacaaacttaaagtgacagttcctttctagcccttgatcttaatcatggctgttataattgctacacctttctgtaagccaaaaggttgtg |
43186324 |
T |
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| Q |
202 |
tatctcacttcctttactttgattactttcaatgtagtaaccatctttatacttcactgcatcaaaagcatattaatgtaaccaaaagcaccctatgatc |
301 |
Q |
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| T |
43186325 |
tatctcacttcctttactttgattactttcaatgtagtaaccatctttatacttcactgcatcaaaagcatattaatgtaaccaaaagcaccctatgatc |
43186424 |
T |
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| Q |
302 |
tcatgcatgcataatgcacaattatttaattacgatagtaactagaaaattaacattctcatattgatgagtttcaaacaaatatcattgaagataa |
398 |
Q |
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| T |
43186425 |
tcatgcatgcataatgcacaattatttaattacgatagtaactagaaaattaacattctcatattgatgagtttcaaacaaatatcattgaagataa |
43186521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 5039479 - 5039519
Alignment:
| Q |
4 |
cactagtcttaagagaatgtattttgcattgtttagctaac |
44 |
Q |
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| T |
5039479 |
cactaatcttaagagaatgtcttttgcattggttagctaac |
5039519 |
T |
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