View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_22 (Length: 392)
Name: NF10211_low_22
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 5593502 - 5593133
Alignment:
| Q |
18 |
acatgtcttcatcttgttatcggctagtaccttagttatattttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctct |
117 |
Q |
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| T |
5593502 |
acatgtcttcatcttgttatcggctagtaccttagttatattttcttcttagagatggaatctatgataaagccatggttggtgtttcctattcttctct |
5593403 |
T |
|
| Q |
118 |
tgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593402 |
tgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaa |
5593303 |
T |
|
| Q |
218 |
ccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgac |
317 |
Q |
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| T |
5593302 |
ccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgac |
5593203 |
T |
|
| Q |
318 |
ataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttcttctctct |
387 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5593202 |
ataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttcttttctct |
5593133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 65 - 387
Target Start/End: Complemental strand, 5587219 - 5586900
Alignment:
| Q |
65 |
cttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagtt |
164 |
Q |
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|||| ||||||||| ||| || ||| ||||||||| ||| ||| || |||| ||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
5587219 |
cttaaatatggaatttataatcaagaaatggttggtagttcttattgttttcttttctgcaaactatttgcaacaatgtgtcaatgggaaatcccaagtg |
5587120 |
T |
|
| Q |
165 |
ccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcg |
264 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| | |||| ||| ||| ||||||||||| || || |||| |
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| T |
5587119 |
ccttgtctatttatctttggagactctttatctgatagtggaaacaacaataaccttcctac---ctctgcaaaatctaattacaatccctatggaatcg |
5587023 |
T |
|
| Q |
265 |
acttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaag |
364 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
5587022 |
actttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaacattcttttaacttaaccatattatgaaacatgaag |
5586923 |
T |
|
| Q |
365 |
tgtttttctttgttcttctctct |
387 |
Q |
| |
|
||||||||||||||||| ||||| |
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|
| T |
5586922 |
tgtttttctttgttcttttctct |
5586900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 59 - 342
Target Start/End: Complemental strand, 5573694 - 5573414
Alignment:
| Q |
59 |
tttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcc |
158 |
Q |
| |
|
|||||||||||| ||||||||||| || || ||||||||||| ||| ||| || ||||||||||||||||||| | |||| ||||||||||||||| |
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| T |
5573694 |
tttcttcttagagatggaatctataatcaaaacatggttggtggttcttattgttttcttgtctgcaaactattttaaacaatgtgtcaatgggaaatct |
5573595 |
T |
|
| Q |
159 |
caagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacg |
258 |
Q |
| |
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||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| ||| ||| |||||||| ||||| | |
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|
| T |
5573594 |
caagtgccttgtgtatttatctttggagattctttatctgatagtggaaacaacaataaccttc---ctacctctgcaaaatctaattacaaaccttatg |
5573498 |
T |
|
| Q |
259 |
ggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaactt |
342 |
Q |
| |
|
| || ||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
5573497 |
gaattgactttccgatgggtccaaccggaagatttaccaacggtagaactgcaattgacataataagtaacattctttcaactt |
5573414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 91 - 355
Target Start/End: Complemental strand, 5576824 - 5576562
Alignment:
| Q |
91 |
catggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattc |
190 |
Q |
| |
|
|||||||| || ||| |||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||| |
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|
| T |
5576824 |
catggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattc |
5576725 |
T |
|
| Q |
191 |
tttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaaga |
290 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| | |||| ||| ||| |||||||| ||||| || || ||||||||||||||||||||||||||| |
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|
| T |
5576724 |
tttatctgatagtggaaacaataacaaccttcccac---ctctgcaaaatctaattacaaaccttatggaattgacttcccgatgggcccaaccggaaga |
5576628 |
T |
|
| Q |
291 |
tttaccaacggtcgaactacaattgacataataagtaacatt-cttttaacttatccatattatga |
355 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||| | || |||||||| ||||||||| |
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|
| T |
5576627 |
tttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga |
5576562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 57 - 193
Target Start/End: Complemental strand, 5582971 - 5582835
Alignment:
| Q |
57 |
attttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat |
156 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5582971 |
attttcttcttagagatggattctataataaagacatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat |
5582872 |
T |
|
| Q |
157 |
cccaagttccttgtctttttatctttggagattcttt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
5582871 |
cccaagttccttgtctttttatctttggagattcttt |
5582835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 12064683 - 12064775
Alignment:
| Q |
244 |
attacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
336 |
Q |
| |
|
||||||| ||||| || || |||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
12064683 |
attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattcttt |
12064775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 336
Target Start/End: Original strand, 12051663 - 12051943
Alignment:
| Q |
57 |
attttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat |
156 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||| ||||||||||| | | |||||| || |||| ||||||||||| || || |||| ||| ||||| |
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|
| T |
12051663 |
attttcttcttagagacggaatctatgatcaagacatggttggtgatgcttattcttttcatgtccgcaaactatttacaacacagtgtctatgagaaat |
12051762 |
T |
|
| Q |
157 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatcctta |
256 |
Q |
| |
|
||||| ||| |||| ||||||||||| || ||||||| |||| ||| ||||||||| ||||||| ||| || | | || ||||||| ||||| |
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|
| T |
12051763 |
atcaagtacctagtctgtttatctttggggactctttatatgatagtgaaaacaacaataaccttc---ctacctttgcttaatttgattacaaacctta |
12051859 |
T |
|
| Q |
257 |
cgggatcga---cttcc-cgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
336 |
Q |
| |
|
|| ||||| ||||| || | ||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
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|
| T |
12051860 |
tggaatcgattccttcctcgctcggcgcaaccagaagatttaccaacggtcgaactgcaattaacataataagtaacgttcttt |
12051943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 286 - 353
Target Start/End: Original strand, 12059314 - 12059381
Alignment:
| Q |
286 |
gaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattat |
353 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| | ||||||| |
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|
| T |
12059314 |
gaagatttaccaatggtcgaactgcaattgacataataagtaacattctttcaatttaactatattat |
12059381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 5582793 - 5582732
Alignment:
| Q |
296 |
caacggtcgaactacaattgacataataagtaac-attcttttaacttatccatattatgaa |
356 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| || ||||| |||||||||| |
|
|
| T |
5582793 |
caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa |
5582732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 12064543 - 12064623
Alignment:
| Q |
53 |
ttatattttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactattt |
133 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||| ||||||||||| | | |||||| || |||| ||||||||||| |
|
|
| T |
12064543 |
ttatattttcttcttagagacggaatctatgatcaagacatggttggtgatgcttattcttttcatgtccgcaaactattt |
12064623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 12059091 - 12059139
Alignment:
| Q |
53 |
ttatattttcttcttagatatggaatctatgataaagccatggttggtg |
101 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||| ||||||||||| |
|
|
| T |
12059091 |
ttatattttcttcttagagacggaatctatgatcaagacatggttggtg |
12059139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 36358051 - 36357988
Alignment:
| Q |
157 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacct |
220 |
Q |
| |
|
||||||| || |||||||| || ||||||||||||||||| || ||||||||||||| ||||| |
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|
| T |
36358051 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacct |
36357988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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