View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_23 (Length: 388)
Name: NF10211_low_23
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 30808384 - 30808029
Alignment:
| Q |
17 |
gacatcaccgaaagaatgtactcgagttgatcgacctgaatgtgattttttacatttgagttttgcgggttcggacgaacaggtatttgtccacccctag |
116 |
Q |
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| T |
30808384 |
gacataaccgaaagaatgtactcgagttgatcggcctgaatgtgattttttacatttgagttttgcgggttccgacgaacaggtatttgtccaccc-tac |
30808286 |
T |
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| Q |
117 |
ttgttgggtttttcgcggacttttgtatcctgggtcaaagcctggaagttccttaacagaaaaatgaagcatgtggcgttaaaacttttctgagtacgcg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30808285 |
ttgttgggtttttcgcggacttttgtatcctgggtcaaagcctggaagttccttaacagaaaaatgaagcatgtggcgttagaacttttctgagtacgcg |
30808186 |
T |
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| Q |
217 |
tacaacacatggacaattgtcttgctttcattgtatt----gattaagagtacaaaatattttagtttatgttgattcaattacctttttatattataaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
30808185 |
tacaacacatggacaattgtcttgctttcattgtattgattgattaatagtacaacatatttcagtttatgttgattcaattacctttt--tattataaa |
30808088 |
T |
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| Q |
313 |
tagaatgatgatcagtatatgataatannnnnnngtaaatttgataaagataaagtaag |
371 |
Q |
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| T |
30808087 |
tagaatgatgatcagtatatgataatatttttttgtaaatttgataaagataaagtaag |
30808029 |
T |
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