View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_24 (Length: 387)
Name: NF10211_low_24
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 214 - 382
Target Start/End: Original strand, 33815799 - 33815964
Alignment:
| Q |
214 |
ggttcgtaaataattaatttggtagattgttaaatctgtctaaaaaataaatagcctatatctgatagcggacgtgcctatagtggataacatataagtt |
313 |
Q |
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| T |
33815799 |
ggttggtaaataattaacgtggtagattgttaaatctgtctaaaaaa---atagcctatatctgatagcggacgtgcctatagtggataacatataagtt |
33815895 |
T |
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| Q |
314 |
agctgatagttgataaattaatatgttgagttttttacgtgtttggttaaactagttgttcatctcact |
382 |
Q |
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| T |
33815896 |
agttgatagttgataaattaatatgttgagttttttacgtgtttggttaaactagttgttcaactcact |
33815964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 33815601 - 33815734
Alignment:
| Q |
16 |
ggattgatggcctttctaatcttagaaacattccaagcagtattagcagcatgtcctgctgttgcaaatacatgctcagtagcttcccctgcttcttccc |
115 |
Q |
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| T |
33815601 |
ggattgatggcctttctaatcttagaaacattccaagcagtattagcagcatgtcctgcagttgcaaatacatgctcagttgcttcccctgcttcttccc |
33815700 |
T |
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| Q |
116 |
catacctgtataaccaagacacacactcttgtta |
149 |
Q |
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| T |
33815701 |
catacctgtataaccaagacacacactcttgtta |
33815734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 43161621 - 43161533
Alignment:
| Q |
16 |
ggattgatggcctttctaatcttagaaacattccaagcagtattagcagcatgtcctgctgttgcaaatacatgctcagtagcttcccc |
104 |
Q |
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||||||||||||||||| |||||| |||||||||||||||| ||||| |||||||| || |||||||| |||||||| ||||||||||| |
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| T |
43161621 |
ggattgatggcctttcttatcttaaaaacattccaagcagtgttagctgcatgtcccgcagttgcaaacacatgctctgtagcttcccc |
43161533 |
T |
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