View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_25 (Length: 372)
Name: NF10211_low_25
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 49673024 - 49673360
Alignment:
| Q |
18 |
gtacgtggcatcatgaactggtcacctcaccttaactctcacttctacgttggattgatacagtggaataagaattctgtaagcgaggacttgcccttct |
117 |
Q |
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| T |
49673024 |
gtacgtggcatcatgaactggtcacctcaccttaactctcacttctacgttggattgatacagtggaataagaattctgtaagcgaggacttgcccttct |
49673123 |
T |
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| Q |
118 |
tgcaagataaccttttctctaacaaattccactagtctttcttatttcaagtcaacttgcgtattaggtggttcaatacggggatatattgtggaagtta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49673124 |
tgcaagataaccttttctctaacaaattccactagtctttcttatttcaagtcaacttgcgtattaggtggttcaatacggggatatattgtggaagtta |
49673223 |
T |
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| Q |
218 |
aagagtgaactacaacacactttcattagtgaatcacattacaatctctacctataaagtgggggattttcttgaaacttgttgcttattttccaccact |
317 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49673224 |
aagagtgaagtacaacacactttcattagtgaatcacattacaatctctacctataaagtgggggattttc----------ttgcttattttccaccact |
49673313 |
T |
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| Q |
318 |
gtttccgtatcttggctttgcaatacacaatgaacccccttttcatt |
364 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49673314 |
gtttccgtatcttggccttgcaatacacaatgaacccccttttcatt |
49673360 |
T |
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