View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_28 (Length: 348)
Name: NF10211_low_28
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 3702556 - 3702863
Alignment:
| Q |
20 |
gaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702556 |
gaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgag |
3702655 |
T |
|
| Q |
120 |
atgaaaggcgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctgaagttagtttgagatcagttaattcattgaaggcta |
219 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702656 |
atgaaaggtgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctgaagttagtttgagatcagttaattcattgaaggcta |
3702755 |
T |
|
| Q |
220 |
gagatgctattgctcataatcttttgcgtcatggtttagcaggcacnnnnnnnctttaaacttataagattaagaactttgtgttatttgttgtattttg |
319 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702756 |
gagatgctattgctcataatcttttgcatcatggtttagcaggcacttcttttctttaaacttataagattaagaactttgtgttatttgttgtattttg |
3702855 |
T |
|
| Q |
320 |
atcattgt |
327 |
Q |
| |
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|||||||| |
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| T |
3702856 |
atcattgt |
3702863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 3698868 - 3699175
Alignment:
| Q |
20 |
gaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
3698868 |
gaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttgttgtgttttgcataacatttgtgag |
3698967 |
T |
|
| Q |
120 |
atgaaaggcgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctgaagttagtttgagatcagttaattcattgaaggcta |
219 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698968 |
atgaaaggtgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctgaagttagtttgagatcagttaattcattgaaggcta |
3699067 |
T |
|
| Q |
220 |
gagatgctattgctcataatcttttgcgtcatggtttagcaggcacnnnnnnnctttaaacttataagattaagaactttgtgttatttgttgtattttg |
319 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
3699068 |
gagatgctattgctcataatcttttgcatcatggtttagcaggcacttcttttctttaaactcataagattaagaactttgtgtaatttgttgtattttg |
3699167 |
T |
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| Q |
320 |
atcattgt |
327 |
Q |
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|||||||| |
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| T |
3699168 |
atcattgt |
3699175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 52250868 - 52250765
Alignment:
| Q |
20 |
gaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgag |
119 |
Q |
| |
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|||||| |||||||||||||||||||| |||| || |||||| || | || ||||||| || ||| |||||||||||||||||||||| |||||||| |
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| T |
52250868 |
gaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaa |
52250769 |
T |
|
| Q |
120 |
atga |
123 |
Q |
| |
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|||| |
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| T |
52250768 |
atga |
52250765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 52262442 - 52262407
Alignment:
| Q |
88 |
gtgcttgttgtgttttgcataacatttgtgagatga |
123 |
Q |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
52262442 |
gtgcttgttgtgttttgcataatatttgtgagatga |
52262407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 17602793 - 17602894
Alignment:
| Q |
20 |
gaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgag |
119 |
Q |
| |
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||||||||||||| |||||| |||||||||||||| | ||| | |||||||| ||||||| ||| ||||||||||||| | ||||| ||||||||| |
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| T |
17602793 |
gaaaggtaggtgggggtgtttgaagaaaaggactgaaattaagttgcaagatttacctgttgttcttggtgcttgttgtgtgcttcataatatttgtgag |
17602892 |
T |
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| Q |
120 |
at |
121 |
Q |
| |
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|| |
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| T |
17602893 |
at |
17602894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 39718869 - 39718924
Alignment:
| Q |
129 |
gagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctga |
184 |
Q |
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|||||||||||||||||||||| | ||||| || | |||||||||||| ||||||| |
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| T |
39718869 |
gagaaaatggatcctgaacttaagattgatgttttggatgatgaaatgcttcctga |
39718924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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