View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_3 (Length: 592)
Name: NF10211_low_3
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 83 - 300
Target Start/End: Complemental strand, 51984944 - 51984727
Alignment:
| Q |
83 |
gaaaagaaaaattaaagaaatacaagtatataagatcattggtcaaacacaacgtcccaccaaattgtttatggggaatcgatgggatgaacacaactgc |
182 |
Q |
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| T |
51984944 |
gaaaagaaaaattaaaggaatacaagtatataagatcattgatcaaacacaacatcccaccaaattgtttatggggaatcgatgggatgaacacagctgc |
51984845 |
T |
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| Q |
183 |
gtctagagctgcgcaaatctttacattagggttagagaaagagagtgcttgttatatacgagtgagtggtcaaaactttctaacccacttaccttgaccg |
282 |
Q |
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| T |
51984844 |
gtctagagctgcgcaaatctttacactagggttagagaaagagagtgcttgttatatacgagtgagcggtcaaaactttctaacccacttaccttgaccg |
51984745 |
T |
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| Q |
283 |
agaaagtaatattgtatt |
300 |
Q |
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|||||||||||||||||| |
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| T |
51984744 |
agaaagtaatattgtatt |
51984727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 367 - 573
Target Start/End: Complemental strand, 51984658 - 51984452
Alignment:
| Q |
367 |
tgccgaggaatatatctatgagacacactattcgtttattattctcaattacttcttttggtcttatttataagagacgtatttttgctccgtttttaat |
466 |
Q |
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| T |
51984658 |
tgccgtggaatatatctatgagacacaccattcgtttattattctcaattactttttctgatcttatttataagagacgtatttttgctccgttcttaat |
51984559 |
T |
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| Q |
467 |
acaaaaaacgtatacattttaagtgtattaattattgaaattccttagtcaaatgaatttatatttaccttctttcaaagacattaacgacactcgaact |
566 |
Q |
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| T |
51984558 |
acaaaaaacgtatacattttaagtgtattaattattgaaattccttaatcaaatgaatttatatttaccttctttcaaagacattaacgagactcaaatt |
51984459 |
T |
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| Q |
567 |
cacaaca |
573 |
Q |
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| T |
51984458 |
cacaaca |
51984452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 51985040 - 51984972
Alignment:
| Q |
19 |
agaaggtaacatcgctcgcaattgataatcaattggcatccatgtcatgcaacctagaaacagggaaaa |
87 |
Q |
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| T |
51985040 |
agaaggtaacatcgctcgcaattgataatcaattggcatccatgtcatgcaacctagaaacagggaaaa |
51984972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 512
Target Start/End: Original strand, 13897145 - 13897175
Alignment:
| Q |
482 |
attttaagtgtattaattattgaaattcctt |
512 |
Q |
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| T |
13897145 |
attttaagtgtattaattattgaaattcctt |
13897175 |
T |
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