View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10211_low_32 (Length: 325)
Name: NF10211_low_32
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 27447304 - 27447604
Alignment:
| Q |
9 |
ggacatcatcatacatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27447304 |
ggacatcatcatacatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
27447403 |
T |
|
| Q |
109 |
gagtccagagaggtaatcatttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactgagagaaaaggacagtcttgtttggct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27447404 |
gagtccagagaggtaatcatttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactgagagaaaaggacagtcttgtttggct |
27447503 |
T |
|
| Q |
209 |
ggtgttgggaaagagttgtcaaaactaagaaacatggaagagtgatcagtaggataatctactatgatctcagggttttgcaagattctacaagtatgat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27447504 |
ggtgttgggaaagagttgtcaaaactaagaaacatggaagagtgatcagtaggataatctactatgatctcagggttttgcaagattctacaagtatgat |
27447603 |
T |
|
| Q |
309 |
g |
309 |
Q |
| |
|
| |
|
|
| T |
27447604 |
g |
27447604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 27430027 - 27430201
Alignment:
| Q |
9 |
ggacatcatcatacatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430027 |
ggacatcatcatacatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
27430126 |
T |
|
| Q |
109 |
gagtccagagaggtaatcatttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactga |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |
|
|
| T |
27430127 |
tagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactga |
27430201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 27430229 - 27430357
Alignment:
| Q |
181 |
tgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtcaaaactaagaaacatggaagagtgatcagtaggataatctactatgatctca |
280 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||| |||| |||| | |||||||||| |
|
|
| T |
27430229 |
tgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatctca |
27430328 |
T |
|
| Q |
281 |
gggttttgcaagattctacaagtatgatg |
309 |
Q |
| |
|
| | ||||||||||||||||||||||||| |
|
|
| T |
27430329 |
gagctttgcaagattctacaagtatgatg |
27430357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University