View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10211_low_33 (Length: 321)

Name: NF10211_low_33
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10211_low_33
NF10211_low_33
[»] chr2 (17 HSPs)
chr2 (1-321)||(7160699-7161020)
chr2 (214-284)||(7156175-7156245)
chr2 (214-284)||(7168673-7168743)
chr2 (206-284)||(7174356-7174434)
chr2 (225-284)||(6538843-6538902)
chr2 (216-283)||(11237693-11237760)
chr2 (216-284)||(7199961-7200029)
chr2 (216-284)||(33026657-33026725)
chr2 (217-291)||(33020314-33020388)
chr2 (206-291)||(13924638-13924723)
chr2 (75-111)||(7200131-7200167)
chr2 (216-268)||(36577366-36577418)
chr2 (75-120)||(7156336-7156381)
chr2 (75-120)||(11237549-11237594)
chr2 (74-119)||(11330001-11330046)
chr2 (75-108)||(33020181-33020214)
chr2 (76-120)||(7174517-7174561)
[»] chr3 (36 HSPs)
chr3 (216-269)||(2442039-2442092)
chr3 (216-291)||(4142110-4142185)
chr3 (216-269)||(4157942-4157995)
chr3 (216-285)||(2456249-2456318)
chr3 (216-268)||(3754600-3754652)
chr3 (216-292)||(9561960-9562036)
chr3 (217-284)||(2631358-2631425)
chr3 (216-267)||(2644362-2644413)
chr3 (216-267)||(2659152-2659203)
chr3 (216-291)||(7324407-7324482)
chr3 (216-291)||(7942485-7942560)
chr3 (217-291)||(2492083-2492157)
chr3 (217-291)||(9594600-9594674)
chr3 (218-288)||(23197014-23197084)
chr3 (217-278)||(768318-768379)
chr3 (216-285)||(771481-771550)
chr3 (216-269)||(2696730-2696783)
chr3 (216-265)||(9608346-9608395)
chr3 (216-265)||(13498224-13498273)
chr3 (72-108)||(2456103-2456139)
chr3 (216-267)||(754609-754660)
chr3 (216-267)||(1891064-1891115)
chr3 (216-291)||(2476634-2476709)
chr3 (216-263)||(2502148-2502195)
chr3 (218-268)||(2459277-2459327)
chr3 (75-108)||(763714-763747)
chr3 (216-269)||(803216-803269)
chr3 (216-269)||(989396-989449)
chr3 (216-269)||(1007461-1007514)
chr3 (216-269)||(1022489-1022542)
chr3 (216-269)||(7432052-7432105)
chr3 (75-108)||(9585288-9585321)
chr3 (216-269)||(12133097-12133150)
chr3 (75-108)||(43991828-43991861)
chr3 (216-292)||(9565804-9565880)
chr3 (72-108)||(12217889-12217925)
[»] chr7 (6 HSPs)
chr7 (74-118)||(24723212-24723256)
chr7 (214-277)||(24723352-24723415)
chr7 (216-269)||(1078158-1078211)
chr7 (220-269)||(3927063-3927112)
chr7 (216-266)||(1421170-1421220)
chr7 (216-292)||(39298977-39299053)
[»] chr5 (7 HSPs)
chr5 (216-268)||(11081813-11081865)
chr5 (216-269)||(23766860-23766913)
chr5 (216-269)||(23816708-23816761)
chr5 (216-271)||(3181717-3181772)
chr5 (216-265)||(20292995-20293044)
chr5 (216-269)||(23769644-23769697)
chr5 (216-269)||(23819492-23819545)
[»] chr6 (12 HSPs)
chr6 (220-277)||(7564741-7564798)
chr6 (219-269)||(370783-370833)
chr6 (220-269)||(176338-176387)
chr6 (226-269)||(1442106-1442149)
chr6 (218-289)||(19119065-19119136)
chr6 (218-289)||(19126359-19126430)
chr6 (215-265)||(9703888-9703938)
chr6 (216-278)||(17368366-17368428)
chr6 (217-267)||(24417486-24417536)
chr6 (220-265)||(9819831-9819876)
chr6 (220-268)||(1470922-1470970)
chr6 (75-115)||(4183150-4183190)
[»] chr1 (4 HSPs)
chr1 (209-265)||(24629213-24629269)
chr1 (216-257)||(23896147-23896188)
chr1 (220-284)||(51381438-51381502)
chr1 (216-280)||(51858606-51858670)
[»] scaffold0044 (1 HSPs)
scaffold0044 (220-291)||(89147-89218)
[»] scaffold0015 (2 HSPs)
scaffold0015 (216-266)||(32330-32380)
scaffold0015 (208-266)||(40382-40440)
[»] chr4 (3 HSPs)
chr4 (222-268)||(55419788-55419834)
chr4 (208-266)||(11032902-11032960)
chr4 (219-269)||(22672125-22672175)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 7161020 - 7160699
Alignment:
Q  1 atggttcaggaacagttgtctgtggtactattaattggtcgacatctaaaacttggtcggccacttcattgtttattgtttctcttgatttggagaagga 100  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7161020 atggttcaggaacagttgtctgtggcactattaattggttgacatctaaaacttggtcggccacttcattgtttattgtttctcttgatttggagaagga 7160921  T
Q  101 gtcttatcgagagctattgccaccgcctgatcatagagtgataaccgtggttaattttatgctaggagtgttaagggattgcttgtgcctattttctaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7160920 gtcttatcgagagctattgccaccgcctgatcatagagtgataaccgtggttaattttatgctaggagtgttaagggattgcttgtgcctattttctaat 7160821  T
Q  201 gatcctacttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatcatcctcgtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7160820 gatcctacttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtcttcctcacatgaaagatcatcctcgtt 7160721  T
Q  301 cttggtctc-tgcttctccact 321  Q
    ||||||||| ||||| ||||||    
T  7160720 cttggtctcatgcttgtccact 7160699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 7156245 - 7156175
Alignment:
Q  214 cagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 284  Q
    |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||    
T  7156245 cagatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatg 7156175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 7168743 - 7168673
Alignment:
Q  214 cagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 284  Q
    |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  7168743 cagacgtttggcttatgaaggaatatggaaataacgattcttggactaaattgttccgagttccttacatg 7168673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 7174434 - 7174356
Alignment:
Q  206 tacttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 284  Q
    ||||||| ||||||| |||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||| |||||    
T  7174434 tactttttcagatgtctggcttatgaaggaatatggaaatcaagattcttggactagattgttccgtgttccttacatg 7174356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 6538843 - 6538902
Alignment:
Q  225 cttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 284  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||| || |||||    
T  6538843 cttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtttctaacatg 6538902  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 11237693 - 11237760
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacat 283  Q
    ||||||||||||||| |||||||||||||||  ||  |||||||||||||||||||||||||| ||||    
T  11237693 gatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgttccgtgttccttacat 11237760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 7200029 - 7199961
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 284  Q
    ||||||||| |||||||||||| ||||||| |  |||||||| ||| |||||||||||||||| |||||    
T  7200029 gatgtttgggttatgaaggagtttggaaatgaaaattcttgggctagattgttccgtgttccttacatg 7199961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 33026657 - 33026725
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 284  Q
    ||||||||| |||||||| | |||||||||||  | |||||||||| ||||| ||||||||||||||||    
T  33026657 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtaccgtgttcctcacatg 33026725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 33020314 - 33020388
Alignment:
Q  217 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 291  Q
    |||| ||| |||||||||| |||||||||||  | |||||||||| ||||| |||||||||| ||||| ||||||    
T  33020314 atgtgtggattatgaaggaatatggaaataaaaagtcttggactagattgtaccgtgttccttacatggaagatc 33020388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 291
Target Start/End: Complemental strand, 13924723 - 13924638
Alignment:
Q  206 tacttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 291  Q
    ||||||| | |||||||||||| ||||||||| ||||||| |||| |  |||| ||||||||||||| |||||  |||| ||||||    
T  13924723 tactttttcggatgtttggcttttgaaggagtttggaaatgatgaattctggattaaattgttccgtcttcctagcatggaagatc 13924638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 7200167 - 7200131
Alignment:
Q  75 attgtttctcttgatttggagaaggagtcttatcgag 111  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7200167 attgtttctcttgatttggagaatgagtcttatcgag 7200131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 36577366 - 36577418
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 268  Q
    ||||||||| |||||||||| ||||||||||| || ||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 7156381 - 7156336
Alignment:
Q  75 attgtttctcttgatttggagaaggagtcttatcgagagctattgc 120  Q
    ||||||||| |||||||||||| |||||||| ||||||| ||||||    
T  7156381 attgtttcttttgatttggagacggagtcttttcgagagatattgc 7156336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 11237549 - 11237594
Alignment:
Q  75 attgtttctcttgatttggagaaggagtcttatcgagagctattgc 120  Q
    ||||||||||||||||||||||||||  |||||| |||||| ||||    
T  11237549 attgtttctcttgatttggagaaggaaacttatcaagagctgttgc 11237594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 11330001 - 11330046
Alignment:
Q  74 tattgtttctcttgatttggagaaggagtcttatcgagagctattg 119  Q
    ||||||||| |||||||||||||||| |||||||||| | ||||||    
T  11330001 tattgtttcacttgatttggagaaggggtcttatcgaaaactattg 11330046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 33020181 - 33020214
Alignment:
Q  75 attgtttctcttgatttggagaaggagtcttatc 108  Q
    ||||||||||||||||||||||||||||| ||||    
T  33020181 attgtttctcttgatttggagaaggagtcgtatc 33020214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 7174561 - 7174517
Alignment:
Q  76 ttgtttctcttgatttggagaaggagtcttatcgagagctattgc 120  Q
    ||||||||||| |||||||||| ||||||||| ||||| ||||||    
T  7174561 ttgtttctcttcatttggagaatgagtcttatggagagatattgc 7174517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 2442039 - 2442092
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 2442092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 4142185 - 4142110
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 291  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||||||||||  | ||||| |||||| |||||    
T  4142185 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 4142110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 4157995 - 4157942
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||||||||||    
T  4157995 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 4157942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 2456249 - 2456318
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatga 285  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||||||||| || | ||||| ||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgtaccatattccttacatga 2456318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 3754600 - 3754652
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 268  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||||||||||    
T  3754600 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtt 3754652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 9562036 - 9561960
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatca 292  Q
    ||||||||| ||||||| |||||||||||| | || |||||||||||||| | | |||||||| ||||| |||||||    
T  9562036 gatgtttggattatgaatgagtatggaaatcaagagtcttggactaaattatacagtgttcctaacatgcaagatca 9561960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 2631358 - 2631425
Alignment:
Q  217 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 284  Q
    |||||||| |||||||||| ||||||||| | || |||||||||||||||| | |||||||| |||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcctgacatg 2631425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 2644413 - 2644362
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 267  Q
    ||||||||| |||||||||||||||||||| | || ||||||||||||||||    
T  2644413 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2644362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 2659203 - 2659152
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 267  Q
    ||||||||| |||||||||||||||||||| | || ||||||||||||||||    
T  2659203 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2659152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 7324482 - 7324407
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 291  Q
    ||||||||| |||||||||| || |||||||| || ||||||||||||||||   |||||||| ||||| ||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatc 7324407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 7942485 - 7942560
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 291  Q
    ||||||||| |||||||||||||||| ||||| || ||||||| |||||||| |  ||||||| ||||| ||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatggaagatc 7942560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 2492083 - 2492157
Alignment:
Q  217 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 291  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||||||   |||||||| ||||| ||||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatc 2492157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 9594674 - 9594600
Alignment:
Q  217 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 291  Q
    |||||||| |||||||  |||| |||||| | || ||||||||||||||||||| ||||||| ||||| ||||||    
T  9594674 atgtttggattatgaataagtacggaaatgaagagtcttggactaaattgttccatgttcctaacatgcaagatc 9594600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 23197014 - 23197084
Alignment:
Q  218 tgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaag 288  Q
    ||||||||| |||||||| ||||||||| | || ||||||||||||||||| ||| ||||| |||| ||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtttcgtattccttacataaaag 23197084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 768379 - 768318
Alignment:
Q  217 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcct 278  Q
    |||||||| ||||||| ||||| |||||| | || ||||||||||||||||||| |||||||    
T  768379 atgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttccatgttcct 768318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 771550 - 771481
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatga 285  Q
    ||||||||| |||||||||| ||||||||||  || |||||||||||||||| ||  |||||| ||||||    
T  771550 gatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgtaccacgttccttacatga 771481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 2696783 - 2696730
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||||||| |||||||||| ||||||||||| || ||||||| ||||||||||    
T  2696783 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttc 2696730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 9608395 - 9608346
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 265  Q
    ||||||||| |||||||||| ||||||||||  |||||||||||||||||    
T  9608395 gatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 265  Q
    ||||||||| |||||||||| ||||||||||| || ||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 2456103 - 2456139
Alignment:
Q  72 tttattgtttctcttgatttggagaaggagtcttatc 108  Q
    |||||||||||||||||||||||||||||||| ||||    
T  2456103 tttattgtttctcttgatttggagaaggagtcatatc 2456139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 754660 - 754609
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 267  Q
    ||||||||| ||||||||||||||||| || | || ||||||||||||||||    
T  754660 gatgtttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 1891115 - 1891064
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 267  Q
    ||||||||| ||||||||||  |||||||||| || ||||||||||||||||    
T  1891115 gatgtttggattatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 2476634 - 2476709
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 291  Q
    ||||||||| |||||||  | ||||||||||| || |||||||||||||||| |  ||||||| ||||| ||||||    
T  2476634 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacactgttcctaacatgcaagatc 2476709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 2502148 - 2502195
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaa 263  Q
    ||||||||| |||||||||||||||||||||| || | ||||||||||    
T  2502148 gatgtttggattatgaaggagtatggaaataaggagttttggactaaa 2502195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 2459277 - 2459327
Alignment:
Q  218 tgtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 268  Q
    ||||||| |||||||||| ||||||||||| || |||||||| ||||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtt 2459327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 763747 - 763714
Alignment:
Q  75 attgtttctcttgatttggagaaggagtcttatc 108  Q
    ||||||||||||||||||||||||||||| ||||    
T  763747 attgtttctcttgatttggagaaggagtcgtatc 763714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 803269 - 803216
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||||||| ||||||| || ||||||||||| || ||||||||||| ||||||    
T  803269 gatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttc 803216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 989396 - 989449
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||||||| | ||||| ||||| |||||||| || ||||||||||||||||||    
T  989396 gatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttc 989449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 1007461 - 1007514
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||||||| | |||||||| ||||||||||| || || |||||||||||||||    
T  1007461 gatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttc 1007514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 1022489 - 1022542
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||||||| | |||||||| ||||||||||| || || |||||||||||||||    
T  1022489 gatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttc 1022542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 7432105 - 7432052
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    |||||||||  ||||||||| ||||||||||| || || |||||||||||||||    
T  7432105 gatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttc 7432052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 9585321 - 9585288
Alignment:
Q  75 attgtttctcttgatttggagaaggagtcttatc 108  Q
    ||||||||||||||||||||||||||||| ||||    
T  9585321 attgtttctcttgatttggagaaggagtcgtatc 9585288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 12133097 - 12133150
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||||||| |||||| ||||||||||||||  || || |||||||||||||||    
T  12133097 gatgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttc 12133150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 43991828 - 43991861
Alignment:
Q  75 attgtttctcttgatttggagaaggagtcttatc 108  Q
    |||||||||||||||||||||| |||||||||||    
T  43991828 attgtttctcttgatttggagacggagtcttatc 43991861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 9565880 - 9565804
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatca 292  Q
    ||||||||| ||||||||||||| ||| || | || |||||||||||||||| |  ||||||| ||||  |||||||    
T  9565880 gatgtttggattatgaaggagtacggagatcaagagtcttggactaaattgtacattgttcctaacatacaagatca 9565804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 12217889 - 12217925
Alignment:
Q  72 tttattgtttctcttgatttggagaaggagtcttatc 108  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  12217889 tttattgtttctcttgatttagagaaggagtcatatc 12217925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 24723212 - 24723256
Alignment:
Q  74 tattgtttctcttgatttggagaaggagtcttatcgagagctatt 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  24723212 tattgtttctcttgatttggagaaggagtcttatcaagagctatt 24723256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 24723352 - 24723415
Alignment:
Q  214 cagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcc 277  Q
    |||| |||||||||||||||||||||  ||||| ||| ||||||||||||||||||| ||||||    
T  24723352 cagaggtttggcttatgaaggagtatataaatagtgaatcttggactaaattgttccatgttcc 24723415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 1078211 - 1078158
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||||||| |||||||||||||||||||||  || || |||||||||||||||    
T  1078211 gatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttc 1078158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 3927063 - 3927112
Alignment:
Q  220 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||| |||||||||| |||||||||||  ||||||||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 1421220 - 1421170
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 266  Q
    |||||||||||||||||||| || |||||||| || ||||||| |||||||    
T  1421220 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattg 1421170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 39298977 - 39299053
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatca 292  Q
    ||||||||| || ||||||| | ||||||||| || || ||||||||||| | | |||||||| ||||| |||||||    
T  39298977 gatgtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttccttacatggaagatca 39299053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 11081813 - 11081865
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 268  Q
    ||||||||| |||||||||||||||||||||| || |||||||||||||||||    
T  11081813 gatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtt 11081865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 23766913 - 23766860
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||||||| ||||||| || ||||||||||| || ||||||||||||||||||    
T  23766913 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttc 23766860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 23816761 - 23816708
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||||||| ||||||| || ||||||||||| || ||||||||||||||||||    
T  23816761 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttc 23816708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 3181717 - 3181772
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccg 271  Q
    |||||||||||||||||||| ||||||||| | || ||||||| ||||||| ||||    
T  3181717 gatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattgatccg 3181772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 265  Q
    ||||||||| |||||||||| ||||||| ||| || ||||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 23769697 - 23769644
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||||||| |||||||||| ||||| ||||| |  ||||||||||||||||||    
T  23769697 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttc 23769644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 23819545 - 23819492
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    ||||||||| |||||||||| ||||| ||||| |  ||||||||||||||||||    
T  23819545 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttc 23819492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 7564798 - 7564741
Alignment:
Q  220 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcc 277  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||||| |||||||    
T  7564798 tttgggttatgaaggattatggaaacaaggattcttggactaaattgttcagtgttcc 7564741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 370833 - 370783
Alignment:
Q  219 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    |||||| |||||||| | ||||||||||| |||||||||||||||||||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgttc 370783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 176338 - 176387
Alignment:
Q  220 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    |||||| |||||| || ||||||||||| |||||||||||||||||||||    
T  176338 tttggcgtatgaatgattatggaaataaagattcttggactaaattgttc 176387  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 1442149 - 1442106
Alignment:
Q  226 ttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||    
T  1442149 ttatgaaggattatggaattaaagattcttggactaaattgttc 1442106  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 19119065 - 19119136
Alignment:
Q  218 tgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaaga 289  Q
    ||||||| | |||||||| ||||||||| | || ||||||||||||||||| | ||||||| ||||| ||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaaga 19119136  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 19126359 - 19126430
Alignment:
Q  218 tgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaaga 289  Q
    ||||||| | |||||||| ||||||||| | || ||||||||||||||||| | ||||||| ||||| ||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaaga 19126430  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 9703938 - 9703888
Alignment:
Q  215 agatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 265  Q
    |||| |||||||||||||||| ||||||||||  |||| ||||||||||||    
T  9703938 agatatttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 17368366 - 17368428
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcct 278  Q
    ||||||||||| ||||| |||||||||||| | |  ||||||||||||||||| | |||||||    
T  17368366 gatgtttggctgatgaaagagtatggaaatgaagggtcttggactaaattgtttcatgttcct 17368428  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 24417536 - 24417486
Alignment:
Q  217 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 267  Q
    |||||||| ||||||| || ||||||||||| || ||||||||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgt 24417486  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  220 tttggcttatgaaggagtatggaaataatgattcttggactaaatt 265  Q
    |||||||||||||||| ||||||||||  || ||||||||||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 1470970 - 1470922
Alignment:
Q  220 tttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 268  Q
    ||||| ||||||| || ||||||||||| ||||||||| ||||||||||    
T  1470970 tttgggttatgaaagattatggaaataaagattcttggtctaaattgtt 1470922  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 4183190 - 4183150
Alignment:
Q  75 attgtttctcttgatttggagaaggagtcttatcgagagct 115  Q
    |||||||||||| ||||| ||||||||||||||| ||||||    
T  4183190 attgtttctcttcatttgcagaaggagtcttatcaagagct 4183150  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 24629269 - 24629213
Alignment:
Q  209 ttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 265  Q
    ||||||||||||||||||||||||||| || |||||||| || ||||||| ||||||    
T  24629269 ttttacagatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 23896188 - 23896147
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttgg 257  Q
    |||||||||||||||||||| ||||||||||| || ||||||    
T  23896188 gatgtttggcttatgaaggaatatggaaataaagagtcttgg 23896147  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 51381502 - 51381438
Alignment:
Q  220 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 284  Q
    ||||| ||||||| || ||||||||| | || |||||||||||||||||| || ||||| |||||    
T  51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 51858606 - 51858670
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctca 280  Q
    ||||||||| | |||||||| |||||||||   || |||||||||||||||||  ||||||||||    
T  51858606 gatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgttaagtgttcctca 51858670  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 89147 - 89218
Alignment:
Q  220 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 291  Q
    ||||| |||||||||| ||||||||||| || |||||||||||||||| |  ||||||| ||||| ||||||    
T  89147 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatggaagatc 89218  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 32380 - 32330
Alignment:
Q  216 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 266  Q
    |||||||||||||||||||| ||||||||||| || ||||||| |||||||    
T  32380 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 32330  T

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Target: scaffold0015; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 40440 - 40382
Alignment:
Q  208 cttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 266  Q
    ||||||| |||||||||||||||||||| |||| |||||| || ||||||| |||||||    
T  40440 cttttactgatgtttggcttatgaaggaatatgaaaataaagactcttggattaaattg 40382  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 55419788 - 55419834
Alignment:
Q  222 tggcttatgaaggagtatggaaataatgattcttggactaaattgtt 268  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||    
T  55419788 tggcttatgaaggtttatggaaataaagattcttggactaaattgtt 55419834  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 11032902 - 11032960
Alignment:
Q  208 cttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 266  Q
    ||||||| ||||||||||| |||||||| || |||||||| || ||||||| |||||||    
T  11032902 cttttaccgatgtttggctcatgaaggaatacggaaataaagagtcttggattaaattg 11032960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 22672175 - 22672125
Alignment:
Q  219 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 269  Q
    |||||| | |||||||| ||||||||||| || ||||||||||||||||||    
T  22672175 gtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttc 22672125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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