View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_35 (Length: 300)
Name: NF10211_low_35
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 13827512 - 13827792
Alignment:
| Q |
1 |
ggtaaattaaaattgataagagaaatgatatgatgcgccattatctagttaattaatagctttgtgtttggcataggattttggttatggtcctaagatt |
100 |
Q |
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| T |
13827512 |
ggtaaattaaaattgataagagaaatgatatgatgcgccattatctagttaattaatagctttgtgtttggcataggattttggttatggtcctaagatt |
13827611 |
T |
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| Q |
101 |
ggcagagaatattgtgccttgccgtccaagaacagaatatatatagnnnnnnncttagaggactagaatatttagannnnnnnagaggaccagaatattt |
200 |
Q |
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| T |
13827612 |
ggcagagaatattgtgccttgccgtccaagaacagaatatata--gtttttttcttagaggaccagaatatttagatttttttagaggaccacaatattt |
13827709 |
T |
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| Q |
201 |
agatatacaccacctgcatgcattcggtgatgaataatatattttacaattatctaacttttgtagaacaaataataaattgttcc |
286 |
Q |
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| T |
13827710 |
agatatacaccacctgcatgcattcagtgatgaata---tattttacaattatctaacttttgtagaacaaataataaactgttcc |
13827792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 42 - 286
Target Start/End: Original strand, 13823158 - 13823401
Alignment:
| Q |
42 |
tatctagttaattaatagctttgtgtttggcataggattttggttatggtcctaagattggcagagaatattgtgccttgccgtccaagaacagaatata |
141 |
Q |
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| T |
13823158 |
tatctagttaattaatagctttgtttttggaataggat---ggttatggtcctaagattggcagagaatattgtgccttgccgtccaaaaacagaatata |
13823254 |
T |
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| Q |
142 |
ta-tagnnnnnnncttagaggactagaatatttagannnnnnnagaggacc--agaatatttag--atatacaccacctgcatgcattcggtgatgaata |
236 |
Q |
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| T |
13823255 |
tagttttttttttcttagaggaccagaatatttagatttttttagaggaccaaaaaatatatagatatatacaccacctgcatgcatgcagtgatg---a |
13823351 |
T |
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| Q |
237 |
atatattttacaattatctaacttttgtagaacaaataataaattgttcc |
286 |
Q |
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| T |
13823352 |
atatattttacaattatctaacttttgtagaataaataataaattgttcc |
13823401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 13823074 - 13823126
Alignment:
| Q |
8 |
taaaattgataagagaa--atgatatgatgcgccattatctagttaattaata |
58 |
Q |
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| T |
13823074 |
taaaattgataagagaatgatgatatgatgcgccattatctagttaattaata |
13823126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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