View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_37 (Length: 293)
Name: NF10211_low_37
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 30050769 - 30050929
Alignment:
| Q |
11 |
acatcaaatccactaagcaa-gtacccagtcttcaatcttaacccttgaattatttaacattaaatcaatggttaagtatatggtacataaaaagattct |
109 |
Q |
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| T |
30050769 |
acatcaaatccactaagcaaagtacccagtcttcaatcttaacccttgaattatttaacattaaatcaatggttaagtatatggtacataaaaagattct |
30050868 |
T |
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| Q |
110 |
ggctgatgttgcatttaagtttgatacacaaattctatgatttatgtatgctaaatgccaa |
170 |
Q |
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| T |
30050869 |
ggctgatgttgcatttaagtttgatacacaaattctatgatttatgtatgctaaatgccaa |
30050929 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 40863425 - 40863498
Alignment:
| Q |
12 |
catcaaatccactaagcaagtacccagtcttcaatcttaacccttgaattatttaacattaaatcaatggttaa |
85 |
Q |
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| T |
40863425 |
catcaaatccactaagcaagtacccattcttcaatcttgaccattgaattatttaatattatatcaatggttaa |
40863498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 30050982 - 30051035
Alignment:
| Q |
167 |
ccaagctaaacgtaacacagctggggagttttggttatttgtttgcttactgct |
220 |
Q |
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| T |
30050982 |
ccaagctaaacgtaacacagctggagagttttggttatttgtttgcttactgct |
30051035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 30064769 - 30064821
Alignment:
| Q |
11 |
acatcaaatccactaagcaa-gtacccagtcttcaatcttaacccttgaatta |
62 |
Q |
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| T |
30064769 |
acatcaaatccactaagcaaagtacccagtcttcaatcttaacccttgaatta |
30064821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 3981398 - 3981471
Alignment:
| Q |
12 |
catcaaatccactaagcaagtacccagtcttcaatcttaacccttgaattatttaacattaaatcaatggttaa |
85 |
Q |
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|||||||||||||||||||||||||| ||||||||||| | ||||||||||||| |||| ||||| |||||| |
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| T |
3981398 |
catcaaatccactaagcaagtacccattcttcaatcttggcaattgaattatttaatattatatcaacggttaa |
3981471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 21996974 - 21996901
Alignment:
| Q |
12 |
catcaaatccactaagcaagtacccagtcttcaatcttaacccttgaattatttaacattaaatcaatggttaa |
85 |
Q |
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||||||| ||||||||||||||||| ||||||||||| || || |||||||||| |||| || ||||||||| |
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| T |
21996974 |
catcaaactcactaagcaagtacccattcttcaatcttggccattaaattatttaatattatattaatggttaa |
21996901 |
T |
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