View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_40 (Length: 269)
Name: NF10211_low_40
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 9821626 - 9821866
Alignment:
| Q |
1 |
catcggatgagagaccttgaagaatcgggaaatatcaccatgattggtatgcgagcttgtcttcattaatagaccttgcatgtcttcgtataaattatga |
100 |
Q |
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| T |
9821626 |
catcgcatgagagaccttgaagaatcgggaaatatcaccatgattggtacgccagcttgtcttcattattagaccttgcatgt-----------ttatga |
9821714 |
T |
|
| Q |
101 |
aacaagtaatcttgtaatgtttggttcatctgaaagacgtttacctctcgtatagcaggggaagaatgtatagggatgctttgaacatgtctaaattgcc |
200 |
Q |
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| T |
9821715 |
aacaagtaatcttgtaatgtttggtccatctgaaagacgtttacctctcgtatagcaggggaagaatgtatagggatgttttgaacacttctaaattgca |
9821814 |
T |
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| Q |
201 |
tatgtgcacactccatcaagtgtcgatgacacatcttgttgccgcacattat |
252 |
Q |
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| T |
9821815 |
tatgtgcacactctatcaagtgtcgatgacacatcttgttgccgcacattat |
9821866 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 50020736 - 50020788
Alignment:
| Q |
101 |
aacaagtaatcttgtaatgtttggttcatctgaaagacgtttacctctcgtat |
153 |
Q |
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| T |
50020736 |
aacaagtaatcttgaaatgtttggtctatttgaaagacatttacctcttgtat |
50020788 |
T |
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