View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10211_low_47 (Length: 249)

Name: NF10211_low_47
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10211_low_47
NF10211_low_47
[»] chr6 (2 HSPs)
chr6 (1-241)||(15842165-15842412)
chr6 (1-137)||(14457842-14457978)
[»] scaffold0272 (1 HSPs)
scaffold0272 (7-239)||(1152-1391)
[»] chr3 (5 HSPs)
chr3 (1-116)||(21943461-21943576)
chr3 (58-134)||(47475175-47475251)
chr3 (61-125)||(49455455-49455519)
chr3 (7-93)||(26476204-26476290)
chr3 (57-102)||(9367455-9367500)
[»] chr8 (2 HSPs)
chr8 (5-139)||(29576268-29576402)
chr8 (5-94)||(31400981-31401070)
[»] chr4 (4 HSPs)
chr4 (1-139)||(13853002-13853140)
chr4 (7-180)||(29081699-29081872)
chr4 (4-139)||(55352083-55352218)
chr4 (61-101)||(9159247-9159287)
[»] chr7 (1 HSPs)
chr7 (4-145)||(6230730-6230871)
[»] chr1 (3 HSPs)
chr1 (1-101)||(10238143-10238242)
chr1 (1-93)||(21971004-21971096)
chr1 (4-96)||(24615479-24615571)
[»] chr2 (3 HSPs)
chr2 (28-139)||(38969611-38969722)
chr2 (80-137)||(14733568-14733625)
chr2 (7-50)||(33483847-33483890)
[»] scaffold0008 (1 HSPs)
scaffold0008 (61-139)||(58254-58332)
[»] chr5 (2 HSPs)
chr5 (80-179)||(10429171-10429270)
chr5 (28-134)||(3679673-3679779)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 15842165 - 15842412
Alignment:
Q  1 tccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaag 100  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  15842165 tccggattgaaggttaattttctaaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttgtgattttctgaattgtagtgaag 15842264  T
Q  101 ggtgtcttcctttcaagtatttgggtttaccggtaggggtaaatctggggagagttttgacttggcaaccgcttttggatttacttgctcgtagattgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15842265 ggtgtcttcctttcaagtatttgggtttaccggtaggggaaaatccggggagagttttgacttggcaaccgcttttggatttacttgctcgtagattgaa 15842364  T
Q  201 -------gaaaataagttcattagtctaggaggtaggattgttcttct 241  Q
           |||||||||||||||||||||||||||| ||||||||||||    
T  15842365 tagttgggaaaataagttcattagtctaggaggtatgattgttcttct 15842412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 14457842 - 14457978
Alignment:
Q  1 tccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaag 100  Q
    ||||| |||||||||||||||   || ||||| ||||| ||  | ||||| |||| ||| |||||||| ||||| |   | ||||||||||||||| |||    
T  14457842 tccggattgaaggttaatttttataagagttgtttgatgggaattaatgtggcgacggaatttatggatatggcgtgaaactttttgaattgtagtcaag 14457941  T
Q  101 ggtgtcttcctttcaagtatttgggtttaccggtagg 137  Q
    | | | ||||||||||||| |||||||| ||||||||    
T  14457942 gtttttttcctttcaagtacttgggtttgccggtagg 14457978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 1152 - 1391
Alignment:
Q  7 ttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaagggtgtc 106  Q
    |||||||| ||||| || |||||||| |||||||| |||||||| | |||||| |||||||||||||||| || ||||||||||||||||||||| ||||    
T  1152 ttgaaggtgaatttccttaaaagttgtttgattggagtgaatgtggagagggattttatggagatggcttgtggttttttgaattgtagtgaaggctgtc 1251  T
Q  107 ttcctttcaagtatttgggtttaccggtaggggtaaatctggggagagttttgacttggcaaccgcttttggatttacttgctcgtagattgaa------ 200  Q
    | || |||||||||||||| ||||||||| ||| ||||| ||| |||||     ||||||||||  ||||||||||| |  |||||| ||| ||          
T  1252 tcccgttcaagtatttgggcttaccggtaagggcaaatccgggaagagtggctccttggcaacctgttttggatttattatctcgtatattaaataattg 1351  T
Q  201 -gaaaataagttcattagtctaggaggtaggattgttctt 239  Q
     |||||||||||| ||||||| || |||||||| ||||||    
T  1352 ggaaaataagttcgttagtcttggcggtaggatcgttctt 1391  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21943576 - 21943461
Alignment:
Q  1 tccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaag 100  Q
    |||||||||||||| || || || ||||||||||||||  |||||||||| | ||||||||||||||| ||||  | |||||| ||||||||||||||||    
T  21943576 tccgggttgaaggtaaacttccttaaaagttgcttgatatgggtgaatgtggagagggagtttatggaaatggtgtgtgatttcttgaattgtagtgaag 21943477  T
Q  101 ggtgtcttcctttcaa 116  Q
    | || || ||||||||    
T  21943476 gttgcctccctttcaa 21943461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 47475175 - 47475251
Alignment:
Q  58 gagtttatggagatggcttatgattttttgaattgtagtgaagggtgtcttcctttcaagtatttgggtttaccggt 134  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||| |||| || || ||||||||||| ||||||||    
T  47475175 gagtttatggatatggcttgtacttttttgaattgtagtcaagggagtctcccgtttaagtatttggggttaccggt 47475251  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 49455455 - 49455519
Alignment:
Q  61 tttatggagatggcttatgattttttgaattgtagtgaagggtgtcttcctttcaagtatttggg 125  Q
    |||||||  ||||||| | ||||||||||||||||||| |||||| ||||||||||||| |||||    
T  49455455 tttatggcaatggcttgtaattttttgaattgtagtgaggggtgtattcctttcaagtacttggg 49455519  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 26476290 - 26476204
Alignment:
Q  7 ttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgt 93  Q
    ||||||||||||||| |||||||||| ||||| || |||||||| |  ||  | |||||||| |  |||| ||||||||||||||||    
T  26476290 ttgaaggttaattttttcaaaagttgtttgataggtgtgaatgtgggtagaaattttatggatagagcttgtgattttttgaattgt 26476204  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 9367500 - 9367455
Alignment:
Q  57 ggagtttatggagatggcttatgattttttgaattgtagtgaaggg 102  Q
    ||||||||||   ||||||| |||||||||||||||||||||||||    
T  9367500 ggagtttatgaccatggcttgtgattttttgaattgtagtgaaggg 9367455  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 29576402 - 29576268
Alignment:
Q  5 ggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaagggtg 104  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||| || | | |||| ||||| | ||||| | | ||||| |||||| |||||||  |    
T  29576402 ggttgaaggttaattttctgaaaagttgcttgattggggtcaatgtggctaagaagttcatggatacggcttgtaagttttttaattgttgtgaaggtag 29576303  T
Q  105 tcttcctttcaagtatttgggtttaccggtagggg 139  Q
     |||||||| || ||| | || |||||||||||||    
T  29576302 ccttccttttaaatatctaggcttaccggtagggg 29576268  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 31400981 - 31401070
Alignment:
Q  5 ggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgta 94  Q
    ||||||| ||||||||  | ||||||||||||||  |||| ||||| |||| ||| |||||||||||||| | ||| || ||||||||||    
T  31400981 ggttgaaagttaatttctttaaaagttgcttgataagggtaaatgtggcgatggattttatggagatggcgtgtgagttcttgaattgta 31401070  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 13853002 - 13853140
Alignment:
Q  1 tccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaag 100  Q
    ||||| |||||| |||||||| | || ||||  ||||||||||| |||||  ||  ||| ||||||| |||||||| ||| ||||||||||||||| |||    
T  13853002 tccggtttgaagattaatttttttaagagttctttgattggggtaaatgtgccggaggaatttatggggatggcttgtgactttttgaattgtagtcaag 13853101  T
Q  101 ggtgtcttcctttcaagtatttgggtttaccggtagggg 139  Q
    || | ||||| || ||||||||||| |||||||| ||||    
T  13853102 ggaggcttccatttaagtatttgggattaccggtggggg 13853140  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 180
Target Start/End: Original strand, 29081699 - 29081872
Alignment:
Q  7 ttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaagggtgtc 106  Q
    |||||||| ||||| || || ||||||||||| ||| | ||||| |  || || |||||||| ||||||||||| ||||||||||||||| ||||  | |    
T  29081699 ttgaaggtgaatttccttaagagttgcttgatggggataaatgtggatagagactttatggatatggcttatgagtttttgaattgtagtcaaggtagcc 29081798  T
Q  107 ttcctttcaagtatttgggtttaccggtaggggtaaatctggggagagttttgacttggcaaccgcttttggat 180  Q
    | |||||  | ||| | || |||||||| || | ||||| ||| |||||||| |||||||||| |||| |||||    
T  29081799 tcccttttcactatctaggcttaccggtgggagcaaatccgggtagagtttttacttggcaactgcttctggat 29081872  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 55352083 - 55352218
Alignment:
Q  4 gggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaagggt 103  Q
    |||||||||||||| |||  ||| |||||||||||||| ||||||||||  |||||||||||||||  ||| |   ||||| |||||||||| ||||| |    
T  55352083 gggttgaaggttaactttgccaagagttgcttgattggagtgaatgtagaaagggagtttatggaggcggcgtgcaattttatgaattgtagggaaggct 55352182  T
Q  104 gtcttcctttcaagtatttgggtttaccggtagggg 139  Q
     | | || || ||| | |||||||||||||| ||||    
T  55352183 ctttaccatttaagcacttgggtttaccggttgggg 55352218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 9159287 - 9159247
Alignment:
Q  61 tttatggagatggcttatgattttttgaattgtagtgaagg 101  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  9159287 tttatggagatggcttgtaattttttgaattgtagtgaagg 9159247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 6230730 - 6230871
Alignment:
Q  4 gggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaagggt 103  Q
    |||||||| |||||||||   || ||||||||||||||||||||||| |  ||||||||||||||   ||| |   |||||||||||||||| |||||      
T  6230730 gggttgaaagttaattttgcgaagagttgcttgattggggtgaatgttggtagggagtttatggatgcggcgtgcaattttttgaattgtagggaaggaa 6230829  T
Q  104 gtcttcctttcaagtatttgggtttaccggtaggggtaaatc 145  Q
      ||||| ||||||||||||||||| ||| |||||| |||||    
T  6230830 tgcttccgttcaagtatttgggtttgccgataggggcaaatc 6230871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 10238143 - 10238242
Alignment:
Q  1 tccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaag 100  Q
    ||||| ||||||||||||||||  |||||||| ||||| ||||||||||| |  || || ||||| ||||||||||  ||||||||||||||||||||||    
T  10238143 tccggattgaaggttaattttcataaaagttgtttgat-ggggtgaatgtggaaagagattttatcgagatggcttgcgattttttgaattgtagtgaag 10238241  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 21971004 - 21971096
Alignment:
Q  1 tccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgt 93  Q
    |||| |||||||||||||||| |||||||||| ||||| ||| | ||||| ||   |||||||||||| ||||||| | ||||||||||||||    
T  21971004 tccgagttgaaggttaattttttcaaaagttgtttgatggggattaatgtggcaccggagtttatggatatggcttgtaattttttgaattgt 21971096  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 24615571 - 24615479
Alignment:
Q  4 gggttgaaggttaattttctcaaaagttgcttgattggggtgaatgt-agcgagggagtttatggagatggcttatgattttttgaattgtagt 96  Q
    ||||||||| |||||||| | || ||||  ||||| ||||||||||| || |||| | |||||||||||||| | | |||||||||||||||||    
T  24615571 gggttgaagattaattttattaagagttcgttgataggggtgaatgtgagggagg-actttatggagatggcatgtaattttttgaattgtagt 24615479  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 38969611 - 38969722
Alignment:
Q  28 agttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaagggtgtcttcctttcaagtatttgggtt 127  Q
    ||||| ||||||||||||||||| |  |||||||||||||||  ||| | | ||||| |||| ||||| ||||| | |||||| |||||||||||||| |    
T  38969611 agttgtttgattggggtgaatgttggaagggagtttatggaggcggcgtgtaattttatgaactgtagagaaggctctcttccgttcaagtatttgggct 38969710  T
Q  128 taccggtagggg 139  Q
    ||||||| ||||    
T  38969711 taccggttgggg 38969722  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 14733625 - 14733568
Alignment:
Q  80 attttttgaattgtagtgaagggtgtcttcctttcaagtatttgggtttaccggtagg 137  Q
    ||||||| ||||||||||| ||| | ||||||||||||||||||||| | ||||||||    
T  14733625 attttttaaattgtagtgaggggagccttcctttcaagtatttgggtcttccggtagg 14733568  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 33483847 - 33483890
Alignment:
Q  7 ttgaaggttaattttctcaaaagttgcttgattggggtgaatgt 50  Q
    ||||||||||||||| | |||||||||||||| |||||||||||    
T  33483847 ttgaaggttaattttgtgaaaagttgcttgatcggggtgaatgt 33483890  T

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Target: scaffold0008 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 58254 - 58332
Alignment:
Q  61 tttatggagatggcttatgattttttgaattgtagtgaagggtgtcttcctttcaagtatttgggtttaccggtagggg 139  Q
    |||||||  ||||| | ||||||||| ||||||||||||||  |||| || |||||||||||||| |||||||| ||||    
T  58254 tttatggcaatggcgtgtgatttttttaattgtagtgaaggtagtctcccgttcaagtatttggggttaccggtggggg 58332  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 10429171 - 10429270
Alignment:
Q  80 attttttgaattgtagtgaagggtgtcttcctttcaagtatttgggtttaccggtaggggtaaatctggggagagttttgacttggcaaccgcttttgga 179  Q
    ||||||||||||||||| ||||| |||| ||||||   |||||||| || |||||||| |  |||| ||| ||||||   |||||| |||||||||||||    
T  10429171 attttttgaattgtagtcaagggagtctccctttccgttatttggggttgccggtaggaggtaatccgggtagagttgcaacttgggaaccgcttttgga 10429270  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 3679779 - 3679673
Alignment:
Q  28 agttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaagggtgtcttcctttcaagtatttgggtt 127  Q
    ||||| ||||||||||||||||| |  || |||| |||||||  |||||   ||||| |||||||||| ||||| | ||| || ||||| |||||||| |    
T  3679779 agttgtttgattggggtgaatgttggtagagagtgtatggaggcggcttgcaattttatgaattgtagggaaggttctctacccttcaaatatttgggct 3679680  T
Q  128 taccggt 134  Q
    |||||||    
T  3679679 taccggt 3679673  T

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